Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15270 | Canola | mitochondrion | 91.56 | 72.68 |
| Bra033354.1-P | Field mustard | mitochondrion | 90.26 | 71.65 |
| CDX89936 | Canola | mitochondrion | 88.96 | 70.62 |
| AT1G02870.1 | Thale cress | mitochondrion | 87.66 | 69.95 |
| PGSC0003DMT400029584 | Potato | mitochondrion, nucleus | 64.29 | 50.77 |
| Solyc09g075030.2.1 | Tomato | nucleus | 63.64 | 50.0 |
| KRH31880 | Soybean | nucleus | 50.65 | 46.71 |
| VIT_07s0005g00270.t01 | Wine grape | mitochondrion, nucleus | 59.09 | 46.19 |
| KRH71564 | Soybean | nucleus | 50.0 | 46.11 |
| Zm00001d037917_P001 | Maize | mitochondrion | 50.65 | 41.27 |
| EES19406 | Sorghum | mitochondrion | 49.35 | 40.21 |
| TraesCS1A01G228900.1 | Wheat | nucleus | 50.65 | 40.21 |
| TraesCS1B01G245100.1 | Wheat | nucleus | 50.65 | 40.21 |
| TraesCS1D01G233100.1 | Wheat | nucleus | 50.65 | 40.21 |
| Os05t0367100-01 | Rice | mitochondrion | 50.65 | 40.0 |
| GSMUA_Achr3P08100_001 | Banana | mitochondrion | 46.1 | 37.37 |
| HORVU1Hr1G058480.1 | Barley | mitochondrion | 26.62 | 18.98 |
Protein Annotations
| EnsemblPlants:CDY65862 | EnsemblPlantsGene:GSBRNA2T00050913001 | InterPro:Ribosome_biogenesis_Nop16 | PANTHER:PTHR13243 | PFAM:PF09420 | ProteinID:CDY65862 |
| ProteinID:CDY65862.1 | SEG:seg | UniParc:UPI0004EEABB6 | UniProt:A0A078JKH8 | MapMan:17.1.2.2.1.6 | : |
Description
BnaCnng48930DBnaCnng48930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JKH8]
Coordinates
chrLK034981:-:4440..5254
Molecular Weight (calculated)
17404.6 Da
IEP (calculated)
4.836
GRAVY (calculated)
-0.792
Length
154 amino acids
Sequence
(BLAST)
(BLAST)
001: MADDVPEWDD QASVIQNYKS FGVLSNPNLP GIRSRTDHMI QDDSLNVPPP PEPPTDDPIA KEFEPIDSGS ELEEDDLKTT LGKQRKDGKS APLQPLTTMQ
101: LTHIRRLVEK HGDDISSMYR DRKLNSMQPS VATLQKLCTR YLMYKDKNPV LVPC
101: LTHIRRLVEK HGDDISSMYR DRKLNSMQPS VATLQKLCTR YLMYKDKNPV LVPC
001: MARSRRKYRN SRAKVRVALP KKNPNIFKPA FNFPPKLRAL MGDDVPEWDD QASVIQNYKS FGVISNPNLL GIRARTDHMI QDDSLNVPPP VEPPTDDPIA
101: KEFEPIDSGS ELEEDDLKTA LGKQRKDGKS APLQPLTTMQ RTHIRRLVEK HGDDIEGMYR DRKLNSMQHS VATLRKLCTR YQIYKDKNPI LVS
101: KEFEPIDSGS ELEEDDLKTA LGKQRKDGKS APLQPLTTMQ RTHIRRLVEK HGDDIEGMYR DRKLNSMQHS VATLRKLCTR YQIYKDKNPI LVS
Arabidopsis Description
At1g02870 [Source:UniProtKB/TrEMBL;Acc:Q8RWK5]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.