CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31880	Soybean	nucleus	92.22	92.22
PGSC0003DMT400029584	Potato	mitochondrion, nucleus	68.26	58.46
Solyc09g075030.2.1	Tomato	nucleus	68.26	58.16
Bra033354.1-P	Field mustard	mitochondrion	65.27	56.19
CDY15270	Canola	mitochondrion	64.67	55.67
CDX89936	Canola	mitochondrion	64.07	55.15
AT1G02870.1	Thale cress	mitochondrion	62.28	53.89
VIT_07s0005g00270.t01	Wine grape	mitochondrion, nucleus	62.28	52.79
CDY65862	Canola	cytosol	46.11	50.0
TraesCS1B01G245100.1	Wheat	nucleus	58.08	50.0
TraesCS1D01G233100.1	Wheat	nucleus	58.08	50.0
TraesCS1A01G228900.1	Wheat	nucleus	57.48	49.48
Os05t0367100-01	Rice	mitochondrion	56.29	48.21
EES19406	Sorghum	mitochondrion	54.49	48.15
GSMUA_Achr3P08100_001	Banana	mitochondrion	53.89	47.37
Zm00001d037917_P001	Maize	mitochondrion	53.29	47.09
HORVU1Hr1G058480.1	Barley	mitochondrion	35.93	27.78

Protein Annotations

EMBL:ACUP02000905	EMBL:BT090779	EnsemblPlants:KRH71564	EnsemblPlantsGene:GLYMA_02G155400	EntrezGene:100306596	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0008150	GO:GO:0042273
InterPro:Ribosome_biogenesis_Nop16	PANTHER:PTHR13243	PFAM:PF09420	ProteinID:KRH71564	ProteinID:KRH71564.1	UniParc:UPI0001B152CA
UniProt:C6T026	MapMan:17.1.2.2.1.6	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:15917549..15918745

Molecular Weight (calculated)

19102.0 Da

IEP (calculated)

10.523

GRAVY (calculated)

-0.931

Length

167 amino acids

Sequence
(BLAST)

001: MGRSRRKYKQ SRTKVRVGLP KKNPRLFKPS FSVPPKLLRT LAEEPQWDDQ GTVNSNYSSF GVLSDPNSLT EPSPDPQTFD SGSDLEEDDL KSALGKKRRD
101: GRSAPPQPLT AMQRIHISRL VDKYGNDYQS MLMDIKLNPM QHSIATLQKL CMRYHIYQNK NPLLKAK

Best Arabidopsis Sequence Match ( AT1G02870.1 )
(BLAST)

001: MARSRRKYRN SRAKVRVALP KKNPNIFKPA FNFPPKLRAL MGDDVPEWDD QASVIQNYKS FGVISNPNLL GIRARTDHMI QDDSLNVPPP VEPPTDDPIA
101: KEFEPIDSGS ELEEDDLKTA LGKQRKDGKS APLQPLTTMQ RTHIRRLVEK HGDDIEGMYR DRKLNSMQHS VATLRKLCTR YQIYKDKNPI LVS

Arabidopsis Description

At1g02870 [Source:UniProtKB/TrEMBL;Acc:Q8RWK5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.