Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400029584 | Potato | mitochondrion, nucleus | 98.47 | 98.97 |
| VIT_07s0005g00270.t01 | Wine grape | mitochondrion, nucleus | 68.88 | 68.53 |
| KRH71564 | Soybean | nucleus | 58.16 | 68.26 |
| CDY15270 | Canola | mitochondrion | 67.35 | 68.04 |
| CDX89936 | Canola | mitochondrion | 66.84 | 67.53 |
| AT1G02870.1 | Thale cress | mitochondrion | 66.33 | 67.36 |
| KRH31880 | Soybean | nucleus | 57.14 | 67.07 |
| Bra033354.1-P | Field mustard | mitochondrion | 66.33 | 67.01 |
| CDY65862 | Canola | cytosol | 50.0 | 63.64 |
| EES19406 | Sorghum | mitochondrion | 56.12 | 58.2 |
| Zm00001d037917_P001 | Maize | mitochondrion | 56.12 | 58.2 |
| TraesCS1B01G245100.1 | Wheat | nucleus | 56.63 | 57.22 |
| TraesCS1D01G233100.1 | Wheat | nucleus | 56.63 | 57.22 |
| TraesCS1A01G228900.1 | Wheat | nucleus | 56.12 | 56.7 |
| GSMUA_Achr3P08100_001 | Banana | mitochondrion | 54.08 | 55.79 |
| Os05t0367100-01 | Rice | mitochondrion | 54.59 | 54.87 |
| HORVU1Hr1G058480.1 | Barley | mitochondrion | 35.71 | 32.41 |
Protein Annotations
| EnsemblPlants:Solyc09g075030.2.1 | EnsemblPlantsGene:Solyc09g075030.2 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005730 | GO:GO:0008150 | GO:GO:0042273 | InterPro:Ribosome_biogenesis_Nop16 | PANTHER:PTHR13243 | PFAM:PF09420 |
| SEG:seg | UniParc:UPI000276B77B | UniProt:K4CV80 | MapMan:17.1.2.2.1.6 | : | : |
Description
No Description!
Coordinates
chr9:+:66830829..66833147
Molecular Weight (calculated)
22223.4 Da
IEP (calculated)
9.477
GRAVY (calculated)
-0.856
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGSRRKYKR SRTKVRVGLP KKNPNVFKPA FSLPPKLRSL VNSHWDDKGS VIDNYKSFGV VSNPNLLGVR CRTSHMIETD SLQVPPPKKL PPTSEDDDDD
101: ADAFEDLDDS GSDVEEDDLK SALGKKRRDG KSAPLQPLTT IQRVYISRLV EEYGDDYQSM FMDTKLNKMQ HSVATLEKLC KRYQMYKDKN PLLVGT
101: ADAFEDLDDS GSDVEEDDLK SALGKKRRDG KSAPLQPLTT IQRVYISRLV EEYGDDYQSM FMDTKLNKMQ HSVATLEKLC KRYQMYKDKN PLLVGT
001: MARSRRKYRN SRAKVRVALP KKNPNIFKPA FNFPPKLRAL MGDDVPEWDD QASVIQNYKS FGVISNPNLL GIRARTDHMI QDDSLNVPPP VEPPTDDPIA
101: KEFEPIDSGS ELEEDDLKTA LGKQRKDGKS APLQPLTTMQ RTHIRRLVEK HGDDIEGMYR DRKLNSMQHS VATLRKLCTR YQIYKDKNPI LVS
101: KEFEPIDSGS ELEEDDLKTA LGKQRKDGKS APLQPLTTMQ RTHIRRLVEK HGDDIEGMYR DRKLNSMQHS VATLRKLCTR YQIYKDKNPI LVS
Arabidopsis Description
At1g02870 [Source:UniProtKB/TrEMBL;Acc:Q8RWK5]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.