Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G077700.1 | Wheat | cytosol | 76.14 | 76.72 |
| TraesCS4D01G076100.1 | Wheat | golgi, mitochondrion | 71.21 | 71.48 |
| HORVU4Hr1G013180.1 | Barley | nucleus | 77.27 | 59.48 |
| TraesCS5A01G072600.1 | Wheat | nucleus | 35.98 | 37.55 |
| Bra014221.1-P | Field mustard | nucleus | 21.21 | 25.34 |
| KRH35698 | Soybean | nucleus | 23.48 | 25.2 |
| KRG91075 | Soybean | nucleus | 22.35 | 25.0 |
| CDY32837 | Canola | nucleus | 21.21 | 25.0 |
| CDY16531 | Canola | nucleus | 20.83 | 24.55 |
| GSMUA_Achr4P32570_001 | Banana | nucleus | 24.24 | 24.06 |
| TraesCS4A01G049500.1 | Wheat | nucleus | 24.62 | 23.64 |
| Bra039652.1-P | Field mustard | nucleus | 20.83 | 22.63 |
| CDY61552 | Canola | nucleus | 20.45 | 22.59 |
| CDY20854 | Canola | nucleus | 20.45 | 22.31 |
| VIT_03s0091g00480.t01 | Wine grape | nucleus | 22.35 | 21.22 |
| AT1G49850.1 | Thale cress | nucleus | 20.08 | 21.2 |
| PGSC0003DMT400066172 | Potato | nucleus | 21.59 | 19.79 |
| Solyc01g107290.2.1 | Tomato | nucleus | 20.45 | 19.57 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G237400.1 | EnsemblPlantsGene:TraesCS4A01G237400 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF219 | PFAM:PF13639 | PFscan:PS50089 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr4A:-:546256267..546259001
Molecular Weight (calculated)
28903.9 Da
IEP (calculated)
8.115
GRAVY (calculated)
-0.553
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: MPITAKLFYY QRRRPPPPPI PETAEPRCID SSAARRRVHP IRSAHHRPGY DVFGGSPRER GASSGSITEP TRNVLFSTRQ SSNTSNDRLP DAVQQAKERL
101: HQRLRSVDLF PGRRLTAPAV GTIWAGPDLP SECDTCSSED GGLVNRTIRF NSNASLSGHK DKQVTAETFS NAAVVAPHDL RPVSKLGQEA LQGTIDSDDD
201: VESSVDCSIC LEGCHGASGG LIQLRCKHIF HSACLEQWLQ SRADCPYCRA GVVLSYHGRS GLEY
101: HQRLRSVDLF PGRRLTAPAV GTIWAGPDLP SECDTCSSED GGLVNRTIRF NSNASLSGHK DKQVTAETFS NAAVVAPHDL RPVSKLGQEA LQGTIDSDDD
201: VESSVDCSIC LEGCHGASGG LIQLRCKHIF HSACLEQWLQ SRADCPYCRA GVVLSYHGRS GLEY
001: MTSAYRPRVI VNGTRRTRTF HYFYCRHCSR TIRLRSFGLY GPICPFCSRE INLHDELDIM RPSRPYWDSD TDWITLHLIN EPRSNRFNHD DLVYNTDEEF
101: ADVMPSVQIG PPPASQSAIE AVRTVIITDE DLVKEKVCAI CKEEFEVGEE GKELKCLHLY HSSCIVSWLN IHNTCPICRF EVNLGVSESN VDEGGSYNID
201: NDRSNRFRTR VCSLWPLRMM IDWVHNLIDI RITNS
101: ADVMPSVQIG PPPASQSAIE AVRTVIITDE DLVKEKVCAI CKEEFEVGEE GKELKCLHLY HSSCIVSWLN IHNTCPICRF EVNLGVSESN VDEGGSYNID
201: NDRSNRFRTR VCSLWPLRMM IDWVHNLIDI RITNS
Arabidopsis Description
RING/U-box superfamily protein [Source:TAIR;Acc:AT1G68180]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.