Factsheet for Bra014221.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000638.1-P
Bra000943.1-P
Bra006453.1-P
Bra009226.1-P
Bra009744.1-P
Bra009783.1-P
Bra010714.1-P
Bra011138.1-P
Bra012987.1-P
Bra013840.1-P
Bra015422.1-P
Bra018042.1-P
Bra019205.1-P
Bra020466.1-P
Bra026236.1-P
Bra033264.1-P
Bra033597.1-P
Bra035480.1-P
Bra037384.1-P
Bra037878.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G49850.1	Bra033264.1-P	AT1G01440.1	21798944
AT1G49850.1	Bra015422.1-P	AT1G05410.1	21798944
AT1G49850.1	Bra018042.1-P	AT3G48680.1	21798944
AT1G49850.1	Bra000943.1-P	AT4G01090.1	21798944
AT1G49850.1	Bra037384.1-P	AT4G01090.1	21798944
AT1G49850.1	Bra000638.1-P	AT4G08150.1	21798944
AT1G49850.1	Bra037878.1-P	AT4G08790.1	21798944
AT1G49850.1	Bra035480.1-P	AT4G10470.1	21798944
AT1G49850.1	Bra026236.1-P	AT4G17220.1	21798944
AT1G49850.1	Bra006453.1-P	AT4G24840.1	21798944
AT1G49850.1	Bra013840.1-P	AT4G24840.1	21798944
AT1G49850.1	Bra019205.1-P	AT4G24840.1	21798944
AT1G49850.1	Bra009744.1-P	AT4G29820.1	21798944
AT1G49850.1	Bra011138.1-P	AT4G29820.1	21798944
AT1G49850.1	Bra010714.1-P	AT4G39050.1	21798944
AT1G49850.1	Bra033597.1-P	AT4G39050.1	21798944
AT1G49850.1	Bra009226.1-P	AT5G06780.1	21798944
AT1G49850.1	Bra009783.1-P	AT5G24660.1	21798944
AT1G49850.1	Bra020466.1-P	AT5G24660.1	21798944
AT1G49850.1	Bra012987.1-P	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16531	Canola	nucleus	91.86	90.62
Bra039652.1-P	Field mustard	nucleus	76.92	69.96
AT1G49850.1	Thale cress	nucleus	71.95	63.6
KRG91075	Soybean	nucleus	44.34	41.53
KRH35698	Soybean	nucleus	43.89	39.43
Solyc01g107290.2.1	Tomato	nucleus	42.99	34.42
VIT_03s0091g00480.t01	Wine grape	nucleus	41.63	33.09
PGSC0003DMT400066172	Potato	nucleus	41.18	31.6
Zm00001d048134_P001	Maize	nucleus	38.46	31.25
EER95307	Sorghum	nucleus	38.46	31.02
Zm00001d028055_P001	Maize	nucleus	38.01	30.88
Os03t0206900-01	Rice	nucleus	36.65	29.78
HORVU4Hr1G069450.3	Barley	nucleus	34.39	29.46
TraesCS4B01G255400.1	Wheat	nucleus	36.65	29.35
TraesCS4A01G049500.1	Wheat	nucleus	36.2	29.09
TraesCS4D01G255100.1	Wheat	nucleus	36.2	28.99
GSMUA_Achr6P24690_001	Banana	nucleus	33.94	27.88
TraesCS4B01G077700.1	Wheat	cytosol	28.05	23.66
Os12t0580700-01	Rice	nucleus	26.7	22.87
GSMUA_Achr4P32570_001	Banana	nucleus	27.15	22.56
KXG23810	Sorghum	cytosol	26.24	22.22
TraesCS5A01G072600.1	Wheat	nucleus	24.89	21.74
Zm00001d030843_P001	Maize	nucleus	23.98	21.63
TraesCS4A01G237400.1	Wheat	mitochondrion, nucleus	25.34	21.21
TraesCS5B01G078400.1	Wheat	nucleus	25.79	20.8
TraesCS5D01G085300.1	Wheat	nucleus	25.79	20.73
HORVU5Hr1G019040.1	Barley	cytosol	24.89	20.22
TraesCS4D01G076100.1	Wheat	golgi, mitochondrion	22.62	19.01
HORVU4Hr1G013180.1	Barley	nucleus	28.05	18.08

Protein Annotations

EnsemblPlants:Bra014221.1	EnsemblPlants:Bra014221.1-P	EnsemblPlantsGene:Bra014221	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155	PANTHER:PTHR14155:SF293	PFAM:PF13639	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000254634E	UniProt:M4DCK5	MapMan:35.1

Description

AT1G49850 (E=1e-064) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA08:+:2425126..2425882

Molecular Weight (calculated)

24837.2 Da

IEP (calculated)

8.588

GRAVY (calculated)

-0.739

Length

221 amino acids

Sequence
(BLAST)

001: MTSASELFST RRSRPGRSDP DLESDPSLYR HHHHRRHGIH HHNHRHDSDG CDSPRPRLQR FCHHLGLPER RPARDVQGTP QYLESESNSL GNLNGSERLP
101: GSVLLARARL VQRLRGVSLT TNRSVQMESS FHSTDGVQVS YECNKKPHGL TQGAINGLHR LTFSSAGVET ERRDCSICLE SFTNGDMLIS LPCTHSFHSS
201: CLNPWLIACG DCPYCRRAIA K

Best Arabidopsis Sequence Match ( AT1G49850.1 )
(BLAST)

001: MTSASELFST RRSRPGRSDP ALESDTSSYR HHSHHHHRRH GVHHHNQRHD SDGCDPLRRP TPRLRRFFHH PIQERSRPIR DVQGTSQYLN TDSTDTETQS
101: SSFVNLNGSE RLPGAVLLAR DRLFERLRGV SLSSNSRSNR VSLDDQRESS FHSIDGDPIF QLAGLQVTYE CNKKPQGLTQ DAINCLHRQT FSSAEVKSEM
201: RDCSICLESF TKGDMLISLP CTHSFHSSCL NPWLRACGDC PCCRRAIAKE

Arabidopsis Description

RHY1AProbable E3 ubiquitin-protein ligase RHY1A [Source:UniProtKB/Swiss-Prot;Acc:Q852U6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.