Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G072600.1 | Wheat | nucleus | 55.17 | 56.92 |
| TraesCS5B01G078400.1 | Wheat | nucleus | 58.24 | 55.47 |
| HORVU5Hr1G019040.1 | Barley | cytosol | 56.7 | 54.41 |
| Os12t0580700-01 | Rice | nucleus | 53.64 | 54.26 |
| TraesCS5D01G085300.1 | Wheat | nucleus | 57.09 | 54.18 |
| Zm00001d030843_P001 | Maize | nucleus | 49.43 | 52.65 |
| KRG91075 | Soybean | nucleus | 24.9 | 27.54 |
| CDY32837 | Canola | nucleus | 22.99 | 26.79 |
| CDY16531 | Canola | nucleus | 22.61 | 26.34 |
| Bra014221.1-P | Field mustard | nucleus | 22.22 | 26.24 |
| CDY61552 | Canola | nucleus | 23.75 | 25.94 |
| KRH35698 | Soybean | nucleus | 24.14 | 25.61 |
| EER95307 | Sorghum | nucleus | 26.82 | 25.55 |
| Bra039652.1-P | Field mustard | nucleus | 23.75 | 25.51 |
| CDY20854 | Canola | nucleus | 22.99 | 24.79 |
| VIT_03s0091g00480.t01 | Wine grape | nucleus | 26.05 | 24.46 |
| GSMUA_Achr4P32570_001 | Banana | nucleus | 24.14 | 23.68 |
| PGSC0003DMT400066172 | Potato | nucleus | 24.9 | 22.57 |
| AT1G49850.1 | Thale cress | nucleus | 21.46 | 22.4 |
| Solyc01g107290.2.1 | Tomato | nucleus | 23.37 | 22.1 |
Protein Annotations
| EnsemblPlants:KXG23810 | EnsemblPlantsGene:SORBI_3008G143100 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF219 | PFAM:PF13639 | PFscan:PS50089 | ProteinID:KXG23810 |
| ProteinID:KXG23810.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0003C680AD | UniProt:A0A1B6PDM4 |
| MapMan:35.2 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr8:+:57449814..57452839
Molecular Weight (calculated)
28676.6 Da
IEP (calculated)
7.919
GRAVY (calculated)
-0.625
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MPIASKLVYF QRRPSPAPPD DPGPEPPDPR RRPCRDHHRR RRRSSLSSSH HKPGQDHVPG HQRDAAAKPL GSVGNIAEHA AGMSSSTRLH RSISDHGRLP
101: DAVHQARERL LQRLNSVDLS GRRQKTWPSE SFWAGLTRTT DAGVSTSSDS ILGSLTNCFQ PSEPVVASKV EEGAVIINAD ECMPITVFPK LASELQEAED
201: SEGVEASSPA ECSICLERCA DSGDGLIQLR CRHIFHSACL DRWLRSHADC PYCRATVRVC S
101: DAVHQARERL LQRLNSVDLS GRRQKTWPSE SFWAGLTRTT DAGVSTSSDS ILGSLTNCFQ PSEPVVASKV EEGAVIINAD ECMPITVFPK LASELQEAED
201: SEGVEASSPA ECSICLERCA DSGDGLIQLR CRHIFHSACL DRWLRSHADC PYCRATVRVC S
001: MLTTTILILL IVILMVSLHL YYRWYLLRSS PFNRTTAAST FFTDPSSTPG GLNPSIIKSL PIFTFSAVTA LFAMECSVCL SEFKDNESGR VMPNCKHTFH
101: VDCIDMWFHS HSSCPLCRSL IEPFAGGVKS TMDEVAISIS DPVYGDTNHH EGTETTGDSV PEDSQRKPAA IEISQRNLGE IENDLSRSHS FRSPTDEPDD
201: IFHSEFESRS GEVLLLLLLL SEFRIFCFRR SVACK
101: VDCIDMWFHS HSSCPLCRSL IEPFAGGVKS TMDEVAISIS DPVYGDTNHH EGTETTGDSV PEDSQRKPAA IEISQRNLGE IENDLSRSHS FRSPTDEPDD
201: IFHSEFESRS GEVLLLLLLL SEFRIFCFRR SVACK
Arabidopsis Description
RING/U-box superfamily protein [Source:TAIR;Acc:AT4G15975]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.