Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G06780.1 | OQU85212 | AT1G19010.1 | 21798944 |
| AT5G06780.1 | EES13629 | AT4G30490.1 | 21798944 |
| AT5G06780.1 | KXG26754 | AT4G30490.1 | 21798944 |
| AT5G06780.1 | OQU81040 | AT5G65683.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d019922_P003 | Maize | nucleus | 84.58 | 84.96 |
| Zm00001d005106_P005 | Maize | mitochondrion | 80.4 | 79.18 |
| HORVU5Hr1G053150.1 | Barley | nucleus, plastid | 74.01 | 71.04 |
| TraesCS5B01G170500.1 | Wheat | nucleus | 72.69 | 69.62 |
| TraesCS5D01G177600.1 | Wheat | nucleus | 72.47 | 69.41 |
| TraesCS5A01G173100.1 | Wheat | nucleus, plastid | 71.59 | 68.57 |
| Os09t0279000-01 | Rice | mitochondrion | 73.13 | 64.34 |
| EES14911 | Sorghum | nucleus | 62.78 | 62.09 |
| CDY17848 | Canola | cytoskeleton, cytosol, nucleus | 15.64 | 57.72 |
| KRH38126 | Soybean | nucleus | 41.63 | 56.76 |
| GSMUA_Achr11P... | Banana | nucleus | 31.28 | 56.57 |
| CDX85675 | Canola | nucleus | 46.26 | 53.71 |
| Bra009226.1-P | Field mustard | cytosol | 36.12 | 53.07 |
| Bra008863.1-P | Field mustard | nucleus | 46.04 | 53.05 |
| PGSC0003DMT400016200 | Potato | nucleus | 50.0 | 53.04 |
| GSMUA_AchrUn_... | Banana | nucleus | 44.93 | 52.99 |
| Bra006175.1-P | Field mustard | nucleus | 44.93 | 52.99 |
| Solyc01g073960.2.1 | Tomato | nucleus | 49.78 | 52.93 |
| CDX70488 | Canola | nucleus | 44.49 | 52.6 |
| KRH27522 | Soybean | nucleus | 50.22 | 52.29 |
| CDX73835 | Canola | nucleus | 37.0 | 52.17 |
| CDX70068 | Canola | cytoskeleton, cytosol, nucleus | 32.38 | 52.13 |
| VIT_13s0156g00360.t01 | Wine grape | nucleus | 49.56 | 51.96 |
| AT5G13020.1 | Thale cress | nucleus | 45.37 | 51.89 |
| CDX97218 | Canola | nucleus | 47.14 | 51.82 |
| CDX78501 | Canola | nucleus | 44.27 | 51.8 |
| CDX98955 | Canola | cytoskeleton, cytosol, nucleus | 35.24 | 51.45 |
| Bra001437.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 37.67 | 51.2 |
| Solyc10g044960.1.1 | Tomato | nucleus | 48.68 | 51.16 |
| CDX69677 | Canola | nucleus | 46.26 | 50.85 |
| GSMUA_Achr4P13240_001 | Banana | nucleus | 54.63 | 50.72 |
| KRH36382 | Soybean | nucleus | 50.44 | 48.72 |
| KRG93077 | Soybean | nucleus | 44.71 | 48.56 |
| KRH13882 | Soybean | nucleus | 46.26 | 48.5 |
| KRH36326 | Soybean | nucleus | 33.48 | 47.95 |
| KRH43436 | Soybean | cytosol | 46.26 | 47.84 |
| VIT_08s0007g06350.t01 | Wine grape | nucleus | 50.66 | 47.62 |
| VIT_06s0004g01350.t01 | Wine grape | nucleus | 49.78 | 47.58 |
| AT5G06780.1 | Thale cress | cytoskeleton, cytosol, nucleus | 33.04 | 46.88 |
| CDY68247 | Canola | nucleus | 40.31 | 45.98 |
| PGSC0003DMT400053543 | Potato | nucleus | 39.43 | 45.43 |
| AT3G12140.3 | Thale cress | cytosol | 38.11 | 45.17 |
| EER96978 | Sorghum | nucleus | 38.99 | 44.92 |
| Bra038698.1-P | Field mustard | extracellular | 37.44 | 44.27 |
| GSMUA_Achr3P11710_001 | Banana | nucleus | 47.58 | 44.26 |
| Solyc06g009900.1.1 | Tomato | nucleus | 37.67 | 43.73 |
| Bra004832.1-P | Field mustard | cytosol | 39.43 | 43.66 |
| AT2G44440.1 | Thale cress | nucleus | 40.31 | 42.66 |
| CDY50571 | Canola | extracellular | 37.67 | 42.54 |
| KRH71929 | Soybean | nucleus | 39.21 | 41.98 |
| Solyc03g063280.2.1 | Tomato | nucleus | 42.29 | 41.83 |
| CDY17849 | Canola | plastid | 26.87 | 41.78 |
| CDY42126 | Canola | cytosol | 23.57 | 40.84 |
| GSMUA_Achr4P11340_001 | Banana | cytosol | 31.72 | 39.56 |
| KXG35268 | Sorghum | mitochondrion, nucleus | 53.3 | 39.1 |
| EES15392 | Sorghum | nucleus | 24.89 | 38.31 |
| GSMUA_Achr7P06400_001 | Banana | cytosol | 55.07 | 35.01 |
| Bra023388.1-P | Field mustard | cytosol | 42.95 | 33.51 |
| Bra000353.1-P | Field mustard | nucleus | 37.0 | 31.64 |
| CDX95603 | Canola | nucleus | 39.21 | 31.23 |
| CDX91150 | Canola | nucleus | 46.7 | 31.04 |
| CDX83427 | Canola | nucleus | 35.9 | 30.7 |
| PGSC0003DMT400046911 | Potato | cytoskeleton, cytosol, nucleus | 10.57 | 30.38 |
| GSMUA_Achr11P... | Banana | plastid | 14.1 | 27.12 |
| CDY00757 | Canola | cytosol | 39.43 | 25.43 |
| Bra041089.1-P | Field mustard | cytosol | 15.2 | 23.0 |
| CDY45580 | Canola | mitochondrion | 16.3 | 22.16 |
| EER94188 | Sorghum | cytosol | 14.54 | 11.02 |
Protein Annotations
| Gene3D:1.10.1240.40 | MapMan:35.1 | EntrezGene:8062031 | InterPro:Agenet_dom_plant | UniProt:C5X851 | ncoils:Coil |
| ProteinID:EER98618.1 | InterPro:EMSY-LIKE_plant | InterPro:ENT_dom | InterPro:ENT_dom-like_sf | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0009605 | GO:GO:0009607 | GO:GO:0050832 | InterPro:IPR005491 | InterPro:Lamin-B_rcpt_of_tudor | EnsemblPlants:OQU89150 |
| ProteinID:OQU89150 | ProteinID:OQU89150.1 | PFAM:PF03735 | PFAM:PF09465 | PFscan:PS51138 | PANTHER:PTHR33432 |
| PANTHER:PTHR33432:SF2 | SMART:SM00743 | SMART:SM01191 | EnsemblPlantsGene:SORBI_3002G151600 | SUPFAM:SSF158639 | SUPFAM:SSF63748 |
| unigene:Sbi.10316 | UniParc:UPI0001A842F8 | RefSeq:XP_002462097.1 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr2:-:45141437..45154105
Molecular Weight (calculated)
49354.6 Da
IEP (calculated)
8.199
GRAVY (calculated)
-0.856
Length
454 amino acids
Sequence
(BLAST)
(BLAST)
001: MEYRPSDSSG TDDDLPQFPN SRSIRGSGRV SGNGRALVPA SSYARAPTDM EAQIQQLEQE AYCSVLRAFK AQSDAITWEK EGLMTELRKE LRVSDKAHRE
101: LLNRVNNDNI ICSIREWRST GGLQAGLSNN PQPIHDPVPS PTTSGRKRQK TSQSVPALPA PPLALHSQQL ATPTQPSSST ARKAVPPGPK GKKMKPGQKV
201: PGGSAAKPMS SSAGPSGRGP HMNRNFPGGS APEAQAQNLD PLVGRKVMSR WPEDNSFYEA VISDYNAETG LYALVYDINT ANETWEWVDL KEMGPEDIRW
301: QEDDSGIDPV TYLRSRGAPT SGVRKPTGRG GPMPGSGRGR GLQKNMSKKD FPPPQNGVGK RSSDDIDILH TESLIKEVEK VFSISNPDPQ EVEKAKKALK
401: EQEQSLIDAI ARLAEASDGE SDGHNRGRRN LYAGNQHQAN YIDAMPVGDQ ADAM
101: LLNRVNNDNI ICSIREWRST GGLQAGLSNN PQPIHDPVPS PTTSGRKRQK TSQSVPALPA PPLALHSQQL ATPTQPSSST ARKAVPPGPK GKKMKPGQKV
201: PGGSAAKPMS SSAGPSGRGP HMNRNFPGGS APEAQAQNLD PLVGRKVMSR WPEDNSFYEA VISDYNAETG LYALVYDINT ANETWEWVDL KEMGPEDIRW
301: QEDDSGIDPV TYLRSRGAPT SGVRKPTGRG GPMPGSGRGR GLQKNMSKKD FPPPQNGVGK RSSDDIDILH TESLIKEVEK VFSISNPDPQ EVEKAKKALK
401: EQEQSLIDAI ARLAEASDGE SDGHNRGRRN LYAGNQHQAN YIDAMPVGDQ ADAM
001: MDYRPSDSSG TDDDLPPSHQ GRYQRNARPT GNGRPSVLNS APLSRVHNEM ETQIHLIEQE AYSSILRAFK AQSDAITWEK ESLITELRKE LRVSDEEHRE
101: LLSRVNADEM IRRIREWRKA NSLQSSVPQL VHDAPSPAVS GSRKKQKTSQ SIASLAMGPP SPSLHPSMQP SSSALRRGGP PPGPKTKKPK TSMQYPSTGI
201: AGRPQAGALT NEPGESGSYD PLVGRKVWTK WPDDNQYYEA VITDYNPVEG RHALVYDINS ANETWEWVNL KEISPGDIRW EGEDPGISRK GGHPGQGRGT
301: KTMARGGPAS NAGGRGRGSM RMQQPKTQNG IGKKALGEIE ILHTETLLKE VEKVFGSVNP NPAEVEKAKR VLRDHELALM DAIAKLEEIS DGESGNI
101: LLSRVNADEM IRRIREWRKA NSLQSSVPQL VHDAPSPAVS GSRKKQKTSQ SIASLAMGPP SPSLHPSMQP SSSALRRGGP PPGPKTKKPK TSMQYPSTGI
201: AGRPQAGALT NEPGESGSYD PLVGRKVWTK WPDDNQYYEA VITDYNPVEG RHALVYDINS ANETWEWVNL KEISPGDIRW EGEDPGISRK GGHPGQGRGT
301: KTMARGGPAS NAGGRGRGSM RMQQPKTQNG IGKKALGEIE ILHTETLLKE VEKVFGSVNP NPAEVEKAKR VLRDHELALM DAIAKLEEIS DGESGNI
Arabidopsis Description
EML3EML3 [Source:UniProtKB/TrEMBL;Acc:A0A178UIH0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.