CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83427	Canola	nucleus	79.65	85.5
CDY17848	Canola	cytoskeleton, cytosol, nucleus	15.44	71.54
CDY68247	Canola	nucleus	49.47	70.85
CDY17849	Canola	plastid	36.14	70.55
AT2G44440.1	Thale cress	nucleus	52.11	69.23
Solyc01g073960.2.1	Tomato	nucleus	37.54	50.12
PGSC0003DMT400016200	Potato	nucleus	37.54	50.0
CDX78501	Canola	nucleus	33.68	49.48
CDX70488	Canola	nucleus	33.33	49.48
CDX85675	Canola	nucleus	33.86	49.36
KRH27522	Soybean	nucleus	37.72	49.31
VIT_13s0156g00360.t01	Wine grape	nucleus	37.37	49.19
Solyc10g044960.1.1	Tomato	nucleus	36.84	48.61
CDX70068	Canola	cytoskeleton, cytosol, nucleus	23.68	47.87
CDX73835	Canola	nucleus	26.84	47.52
CDX69677	Canola	nucleus	34.39	47.46
CDX97218	Canola	nucleus	33.86	46.73
CDX98955	Canola	cytoskeleton, cytosol, nucleus	25.26	46.3
KRH13882	Soybean	nucleus	34.39	45.27
KRH36382	Soybean	nucleus	37.19	45.11
KRH43436	Soybean	cytosol	34.74	45.1
PGSC0003DMT400053543	Potato	nucleus	30.35	43.91
Os08t0328300-02	Rice	nucleus	34.21	42.58
Solyc06g009900.1.1	Tomato	nucleus	28.6	41.69
EES14911	Sorghum	nucleus	32.46	40.3
TraesCS5D01G177600.1	Wheat	nucleus	33.33	40.08
CDY42126	Canola	cytosol	18.42	40.08
HORVU5Hr1G053150.1	Barley	nucleus, plastid	33.16	39.96
TraesCS5B01G170500.1	Wheat	nucleus	33.16	39.87
Zm00001d019922_P003	Maize	nucleus	31.58	39.82
TraesCS5A01G173100.1	Wheat	nucleus, plastid	32.63	39.24
OQU89150	Sorghum	nucleus	31.23	39.21
CDY50571	Canola	extracellular	27.19	38.56
Zm00001d050116_P003	Maize	nucleus	30.88	38.43
Zm00001d005106_P005	Maize	mitochondrion	31.05	38.39
Os09t0279000-01	Rice	mitochondrion	32.46	35.85
CDY45580	Canola	mitochondrion	20.18	34.43
CDX91150	Canola	nucleus	33.33	27.82
KXG35268	Sorghum	mitochondrion, nucleus	27.54	25.36
GSMUA_Achr11P...	Banana	plastid	9.65	23.31
CDY00757	Canola	cytosol	28.25	22.87

Protein Annotations

Gene3D:1.10.1240.40	Gene3D:2.30.30.140	MapMan:35.1	EnsemblPlants:CDX95603	ProteinID:CDX95603	ProteinID:CDX95603.1
InterPro:EMSY-LIKE_plant	InterPro:ENT_dom	InterPro:ENT_dom-like_sf	InterPro:F-box-assoc_dom_typ3	GO:GO:0006950	GO:GO:0008150
GO:GO:0009605	GO:GO:0009607	GO:GO:0050832	EnsemblPlantsGene:GSBRNA2T00101474001	InterPro:IPR005491	PFAM:PF03735
PFAM:PF08268	PFscan:PS51138	PANTHER:PTHR33432	PANTHER:PTHR33432:SF6	SMART:SM01191	SUPFAM:SSF158639
SUPFAM:SSF63748	UniParc:UPI0004EE3F10	SEG:seg	:	:	:

Description

BnaC03g24840D

Coordinates

chrLK031890:-:199803..205456

Molecular Weight (calculated)

64613.1 Da

IEP (calculated)

7.533

GRAVY (calculated)

-0.732

Length

570 amino acids

Sequence
(BLAST)

001: MDYESFDSSG TDDDLPPSHR VVPRGGSSVS TNGRPSTLPP SHMYDQVAAD MEAQIHHVEK EAYFSLLRAF RAQADAITWE KDGLITEMRK ELRVSHEEHR
101: ELLARVNADD TIRRIRREAF LSLYSVEEEW RQSGGVQRHA AQVVHDTLPS PSASASIKRH KPNQPIPSQP FASSSPPQAD PTHQFASWTA KRGLVPNVKD
201: KKHKPVLPGS SSLKPIPYHP LDQPPRGQVM NNRLPSVPTS SSEPAKGSGP ESFVGRRVRT RWPEDNAFYE AAITKYDPVE GRHALVYDIG TRNETWEWVK
301: LAEISPRDIE WIGEDPGVCN RYGLNRTTGP NNVPQRGSGL AKTTIKNDLR TSQNGAGKRK HVDIRIRPTN VLIREVERVL GSHNPDPQEV EMAKRVLEEQ
401: EHALVGAITK LGDISNGENG NFAKAQCNAD HEELMKKKKT LVEMERQSLD FFDALVTSHQ TRSLLLEQRS CTSLLWILED VENQEWSRKT FKYPRQWKGF
501: ECHLGSNGVV HTGELMVFQR SLKEAKPFCV YYYDFNIDRS RKVEIQGVET DELLGSRLCY PGYVENIRFL

Best Arabidopsis Sequence Match ( AT2G44440.1 )
(BLAST)

001: MDCKSSDSSG TDDDLPPSHR VPRGGGGGRG GRVAGNGRPL NLPPSYPKMY DDLAADMEAQ IHQIEKEAYI SVLRAFKAQG DAISWEKESV ITELRKELSL
101: SNEEHRELLG RVNSDDTIRR IREWRQSGGM QPSMRNAAQV VHDTLPSPSV SASMKTHKPN QPIPSQPFAS SSPSFHPQAD PTHPFASSTA KRGPVPIVKG
201: KKHKPVFPGS SSTKHAPYHP SDQPPRGQVM NRLPSVPASS SEPTNGIDPE SFLGRRVRTK WPEDNTFYDA IITQYNPVEG RHALVYDIAT PSETWEWVRL
301: SEISPGDIEW IGEDPGLGNR YNGQGHGLNR TTGPNCVPQR GSGLEKNTIR KGFRTSQNGT GKKKHLDIRI RQTDVLIREV ERVLRSHNPD PYEVERAKRV
401: LEEHEHALVG AIAKLGDISD GENEGAFRR

Arabidopsis Description

EML4Protein EMSY-LIKE 4 [Source:UniProtKB/Swiss-Prot;Acc:Q08A72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.