Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU89150 | Sorghum | nucleus | 84.96 | 84.58 |
| Zm00001d005106_P005 | Maize | mitochondrion | 84.51 | 82.86 |
| TraesCS5D01G177600.1 | Wheat | nucleus | 70.58 | 67.3 |
| HORVU5Hr1G053150.1 | Barley | nucleus, plastid | 70.35 | 67.23 |
| TraesCS5B01G170500.1 | Wheat | nucleus | 70.35 | 67.09 |
| TraesCS5A01G173100.1 | Wheat | nucleus, plastid | 69.47 | 66.24 |
| Os09t0279000-01 | Rice | mitochondrion | 69.47 | 60.85 |
| Zm00001d050116_P003 | Maize | nucleus | 58.41 | 57.64 |
| KRH38126 | Soybean | nucleus | 42.04 | 57.06 |
| CDY17848 | Canola | cytoskeleton, cytosol, nucleus | 15.49 | 56.91 |
| GSMUA_Achr11P... | Banana | nucleus | 30.09 | 54.18 |
| Bra009226.1-P | Field mustard | cytosol | 36.73 | 53.72 |
| CDX70488 | Canola | nucleus | 44.91 | 52.86 |
| CDX70068 | Canola | cytoskeleton, cytosol, nucleus | 32.96 | 52.84 |
| CDX73835 | Canola | nucleus | 37.39 | 52.48 |
| Solyc01g073960.2.1 | Tomato | nucleus | 49.56 | 52.46 |
| CDX85675 | Canola | nucleus | 45.35 | 52.43 |
| CDX98955 | Canola | cytoskeleton, cytosol, nucleus | 36.06 | 52.41 |
| PGSC0003DMT400016200 | Potato | nucleus | 49.56 | 52.34 |
| CDX78501 | Canola | nucleus | 44.91 | 52.32 |
| AT5G13020.1 | Thale cress | nucleus | 45.8 | 52.14 |
| Bra006175.1-P | Field mustard | nucleus | 44.25 | 51.95 |
| GSMUA_AchrUn_... | Banana | nucleus | 44.25 | 51.95 |
| KRH27522 | Soybean | nucleus | 49.56 | 51.38 |
| Bra008863.1-P | Field mustard | nucleus | 44.69 | 51.27 |
| Solyc10g044960.1.1 | Tomato | nucleus | 48.67 | 50.93 |
| Bra001437.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 37.39 | 50.6 |
| VIT_13s0156g00360.t01 | Wine grape | nucleus | 48.45 | 50.58 |
| CDX97218 | Canola | nucleus | 45.8 | 50.12 |
| GSMUA_Achr4P13240_001 | Banana | nucleus | 53.54 | 49.49 |
| CDX69677 | Canola | nucleus | 45.13 | 49.39 |
| KRH36382 | Soybean | nucleus | 50.0 | 48.09 |
| KRH43436 | Soybean | cytosol | 46.68 | 48.06 |
| KRH13882 | Soybean | nucleus | 46.02 | 48.04 |
| AT5G06780.1 | Thale cress | cytoskeleton, cytosol, nucleus | 33.41 | 47.19 |
| VIT_06s0004g01350.t01 | Wine grape | nucleus | 49.56 | 47.16 |
| Zm00001d020946_P005 | Maize | nucleus | 39.6 | 47.11 |
| KRH36326 | Soybean | nucleus | 32.74 | 46.69 |
| KRG93077 | Soybean | nucleus | 43.14 | 46.65 |
| VIT_08s0007g06350.t01 | Wine grape | nucleus | 49.78 | 46.58 |
| CDY68247 | Canola | nucleus | 40.04 | 45.48 |
| PGSC0003DMT400053543 | Potato | nucleus | 39.16 | 44.92 |
| AT3G12140.3 | Thale cress | cytosol | 37.83 | 44.65 |
| Bra038698.1-P | Field mustard | extracellular | 37.83 | 44.53 |
| Solyc06g009900.1.1 | Tomato | nucleus | 38.05 | 43.99 |
| Bra004832.1-P | Field mustard | cytosol | 39.38 | 43.41 |
| GSMUA_Achr3P11710_001 | Banana | nucleus | 46.68 | 43.24 |
| AT2G44440.1 | Thale cress | nucleus | 40.71 | 42.89 |
| KRH71929 | Soybean | nucleus | 39.82 | 42.45 |
| CDY50571 | Canola | extracellular | 37.61 | 42.29 |
| Solyc03g063280.2.1 | Tomato | nucleus | 42.7 | 42.05 |
| CDY17849 | Canola | plastid | 26.77 | 41.44 |
| CDY42126 | Canola | cytosol | 23.45 | 40.46 |
| GSMUA_Achr4P11340_001 | Banana | cytosol | 32.52 | 40.38 |
| Zm00001d052893_P002 | Maize | nucleus | 25.44 | 36.16 |
| GSMUA_Achr7P06400_001 | Banana | cytosol | 53.32 | 33.75 |
| Bra023388.1-P | Field mustard | cytosol | 42.7 | 33.16 |
| Bra000353.1-P | Field mustard | nucleus | 38.05 | 32.39 |
| Zm00001d006030_P001 | Maize | cytosol | 36.06 | 32.28 |
| CDX95603 | Canola | nucleus | 39.82 | 31.58 |
| CDX83427 | Canola | nucleus | 36.73 | 31.26 |
| PGSC0003DMT400046911 | Potato | cytoskeleton, cytosol, nucleus | 10.62 | 30.38 |
| CDX91150 | Canola | nucleus | 45.58 | 30.16 |
| GSMUA_Achr11P... | Banana | plastid | 13.72 | 26.27 |
| CDY00757 | Canola | cytosol | 39.38 | 25.28 |
| Bra041089.1-P | Field mustard | cytosol | 15.27 | 23.0 |
| CDY45580 | Canola | mitochondrion | 16.15 | 21.86 |
| Zm00001d032901_P001 | Maize | nucleus | 15.93 | 10.57 |
Protein Annotations
| Gene3D:1.10.1240.40 | EntrezGene:100125653 | MapMan:35.1 | UniProt:A6YRS1 | InterPro:Agenet_dom_plant | ncoils:Coil |
| EMBL:EF647588 | InterPro:EMSY-LIKE_plant | InterPro:ENT_dom | InterPro:ENT_dom-like_sf | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0050832 |
| InterPro:IPR005491 | ProteinID:ONM53926.1 | PFAM:PF03735 | PFscan:PS51138 | PANTHER:PTHR33432 | PANTHER:PTHR33432:SF2 |
| SMART:SM00743 | SMART:SM01191 | SUPFAM:SSF158639 | SUPFAM:SSF63748 | UniParc:UPI000157AF86 | EnsemblPlantsGene:Zm00001d019922 |
| EnsemblPlants:Zm00001d019922_P003 | EnsemblPlants:Zm00001d019922_T003 | SEG:seg | : | : | : |
Description
r-interacting factor1 r-interacting factor1
Coordinates
chr7:-:76564755..76573638
Molecular Weight (calculated)
49077.4 Da
IEP (calculated)
7.689
GRAVY (calculated)
-0.841
Length
452 amino acids
Sequence
(BLAST)
(BLAST)
001: MDYGPSDSSG TDDDLPQLPH RSIRGSGRVS GNGRTIVPAG SYARAPTDME AQIQQLEQEA YCSVLRAFKA QSDAITWEKE GLMTELRKEL RVSDKAHREL
101: LNKVNNDNII CSIREWRSTG GLQASMSNNP QPIHDPVPSP TTSGRKRQKT SQSVPALPAP PAMHSQQLAT PTQPSSSTAR KAVPPVPKGK KTKPGQKVPG
201: GSAAKPMPSS AGPSGRGPHM NRNFPGGSAP EAQAQNVDPL VGRKVMSRWP EDNSFYEAVI SDYNAETGLY VLVYDINTAN ETWEWVDLKE MGPEDIRWKE
301: DDSGIDPVVY LRSRGAPSSG VRKPTGRGGP MPGSGRGRGL PKNMSRKDFP PPQNGVGKRS SDDIDILHTE SLIKEVEKVF SVSNPDPQEV EKAKKALKEQ
401: EQSLIDAIAR LAEASDGESD GLNRGRRNLY AGNQHQANYV DDMPVGDQAD AM
101: LNKVNNDNII CSIREWRSTG GLQASMSNNP QPIHDPVPSP TTSGRKRQKT SQSVPALPAP PAMHSQQLAT PTQPSSSTAR KAVPPVPKGK KTKPGQKVPG
201: GSAAKPMPSS AGPSGRGPHM NRNFPGGSAP EAQAQNVDPL VGRKVMSRWP EDNSFYEAVI SDYNAETGLY VLVYDINTAN ETWEWVDLKE MGPEDIRWKE
301: DDSGIDPVVY LRSRGAPSSG VRKPTGRGGP MPGSGRGRGL PKNMSRKDFP PPQNGVGKRS SDDIDILHTE SLIKEVEKVF SVSNPDPQEV EKAKKALKEQ
401: EQSLIDAIAR LAEASDGESD GLNRGRRNLY AGNQHQANYV DDMPVGDQAD AM
001: MDYRPSDSSG TDDDLPPSHQ GRYQRNARPT GNGRPSVLNS APLSRVHNEM ETQIHLIEQE AYSSILRAFK AQSDAITWEK ESLITELRKE LRVSDEEHRE
101: LLSRVNADEM IRRIREWRKA NSLQSSVPQL VHDAPSPAVS GSRKKQKTSQ SIASLAMGPP SPSLHPSMQP SSSALRRGGP PPGPKTKKPK TSMQYPSTGI
201: AGRPQAGALT NEPGESGSYD PLVGRKVWTK WPDDNQYYEA VITDYNPVEG RHALVYDINS ANETWEWVNL KEISPGDIRW EGEDPGISRK GGHPGQGRGT
301: KTMARGGPAS NAGGRGRGSM RMQQPKTQNG IGKKALGEIE ILHTETLLKE VEKVFGSVNP NPAEVEKAKR VLRDHELALM DAIAKLEEIS DGESGNI
101: LLSRVNADEM IRRIREWRKA NSLQSSVPQL VHDAPSPAVS GSRKKQKTSQ SIASLAMGPP SPSLHPSMQP SSSALRRGGP PPGPKTKKPK TSMQYPSTGI
201: AGRPQAGALT NEPGESGSYD PLVGRKVWTK WPDDNQYYEA VITDYNPVEG RHALVYDINS ANETWEWVNL KEISPGDIRW EGEDPGISRK GGHPGQGRGT
301: KTMARGGPAS NAGGRGRGSM RMQQPKTQNG IGKKALGEIE ILHTETLLKE VEKVFGSVNP NPAEVEKAKR VLRDHELALM DAIAKLEEIS DGESGNI
Arabidopsis Description
EML3EML3 [Source:UniProtKB/TrEMBL;Acc:A0A178UIH0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.