Factsheet for Solyc03g063280.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g091710.2.1
Solyc03g113660.2.1
Solyc06g071250.2.1
Solyc07g006160.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06780.1	Solyc03g113660.2.1	AT1G19010.1	21798944
AT5G06780.1	Solyc06g071250.2.1	AT1G19010.1	21798944
AT5G06780.1	Solyc07g006160.2.1	AT4G30490.1	21798944
AT5G06780.1	Solyc02g091710.2.1	AT5G65683.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046911	Potato	cytoskeleton, cytosol, nucleus	20.7	60.13
Bra009226.1-P	Field mustard	cytosol	35.08	52.1
KRH38126	Soybean	nucleus	37.25	51.35
CDX70068	Canola	cytoskeleton, cytosol, nucleus	31.37	51.06
CDX98955	Canola	cytoskeleton, cytosol, nucleus	34.2	50.48
CDX73835	Canola	nucleus	34.64	49.38
GSMUA_Achr11P...	Banana	nucleus	26.36	48.21
Bra001437.1-P	Field mustard	cytoskeleton, cytosol, nucleus	34.2	47.01
AT5G06780.1	Thale cress	cytoskeleton, cytosol, nucleus	32.24	46.25
Solyc01g073960.2.1	Tomato	nucleus	41.39	44.5
Zm00001d019922_P003	Maize	nucleus	42.05	42.7
OQU89150	Sorghum	nucleus	41.83	42.29
HORVU5Hr1G053150.1	Barley	nucleus, plastid	43.57	42.28
TraesCS5D01G177600.1	Wheat	nucleus	43.36	41.98
TraesCS5B01G170500.1	Wheat	nucleus	43.36	41.98
Os08t0328300-02	Rice	nucleus	41.83	41.92
TraesCS5A01G173100.1	Wheat	nucleus, plastid	42.7	41.35
Zm00001d005106_P005	Maize	mitochondrion	41.18	41.0
EES14911	Sorghum	nucleus	40.96	40.96
Bra038698.1-P	Field mustard	extracellular	34.2	40.89
Zm00001d050116_P003	Maize	nucleus	40.74	40.83
AT3G12140.3	Thale cress	cytosol	33.77	40.47
CDY50571	Canola	extracellular	35.29	40.3
Solyc10g044960.1.1	Tomato	nucleus	37.91	40.28
Solyc06g009900.1.1	Tomato	nucleus	33.77	39.64
KRH71929	Soybean	nucleus	35.73	38.68
CDY42126	Canola	cytosol	20.91	36.64
Os09t0279000-01	Rice	mitochondrion	40.3	35.85
CDY00757	Canola	cytosol	36.17	23.58
KXG35268	Sorghum	mitochondrion, nucleus	31.59	23.42

Protein Annotations

Gene3D:1.10.1240.40	MapMan:35.1	ncoils:Coil	InterPro:EMSY-LIKE_plant	InterPro:ENT_dom	InterPro:ENT_dom-like_sf
GO:GO:0006950	GO:GO:0008150	GO:GO:0009605	GO:GO:0009607	GO:GO:0050832	InterPro:IPR005491
UniProt:K4BH75	PFAM:PF03735	PFscan:PS51138	PANTHER:PTHR33432	PANTHER:PTHR33432:SF7	SMART:SM01191
SUPFAM:SSF158639	SUPFAM:SSF63748	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc03g063280.2	EnsemblPlants:Solyc03g063280.2.1	UniParc:UPI0002767644
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3:+:33951886..33958415

Molecular Weight (calculated)

51127.3 Da

IEP (calculated)

6.516

GRAVY (calculated)

-0.637

Length

459 amino acids

Sequence
(BLAST)

001: MSCIFRICLL CCLQCLPGPI NRCTISILNI NLGTDDDRPQ SQYNRAPARS IIGGNRRFNI SSAPYQRMYV DMEVEIHNLE QDAYGAILRA FKAQSDALTW
101: EKESLITELR KELRVSDDEH RDLLTKVNAD NRIHSIREWR KTNGNQPIHD QLPSPTVSGS RKRAKSQSVI MPLGAPLESL HHQTIAANTQ PTTPGAKWGA
201: APGNGGFRSR PGQQVFSSRP VHYQQAGPGS SSVLRSGELA ERPRDPLIGR RVMTRWPDDN NFYEAIITDY SAVDGRHALV YDMNTPNETW EWVDLKEIRS
301: MDIRWIGDDP GISRGNGGPG YGGVNTLSAG RGRRFARQQF ENDVNASENR IVQKASDEIE ILHTATLIKK VEKVVDASHP DLAELAKAKK MLKEQEQALI
401: DVIAKLTDVC ESGSGEEPPF LRKNDPLGSN HDGADMEPEM RARGQGAPEN HPDEDVIVI

Best Arabidopsis Sequence Match ( AT5G13020.1 )
(BLAST)

001: MDYRPSDSSG TDDDLPPSHQ GRYQRNARPT GNGRPSVLNS APLSRVHNEM ETQIHLIEQE AYSSILRAFK AQSDAITWEK ESLITELRKE LRVSDEEHRE
101: LLSRVNADEM IRRIREWRKA NSLQSSVPQL VHDAPSPAVS GSRKKQKTSQ SIASLAMGPP SPSLHPSMQP SSSALRRGGP PPGPKTKKPK TSMQYPSTGI
201: AGRPQAGALT NEPGESGSYD PLVGRKVWTK WPDDNQYYEA VITDYNPVEG RHALVYDINS ANETWEWVNL KEISPGDIRW EGEDPGISRK GGHPGQGRGT
301: KTMARGGPAS NAGGRGRGSM RMQQPKTQNG IGKKALGEIE ILHTETLLKE VEKVFGSVNP NPAEVEKAKR VLRDHELALM DAIAKLEEIS DGESGNI

Arabidopsis Description

EML3EML3 [Source:UniProtKB/TrEMBL;Acc:A0A178UIH0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.