CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02973
KRH03382
KRH39527
KRH45468
KRH45469
KRH56999
KRH72370
KRH74431
KRH75634

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06780.1	KRH03382	AT1G19010.1	21798944
AT5G06780.1	KRH56999	AT1G19010.1	21798944
AT5G06780.1	KRH02973	AT4G30490.1	21798944
AT5G06780.1	KRH72370	AT4G30490.1	21798944
AT5G06780.1	KRH39527	AT5G65683.1	21798944
AT5G06780.1	KRH45468	AT5G65683.1	21798944
AT5G06780.1	KRH45469	AT5G65683.1	21798944
AT5G06780.1	KRH74431	AT5G65683.1	21798944
AT5G06780.1	KRH75634	AT5G65683.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH71929	Soybean	nucleus	90.69	71.23
Bra009226.1-P	Field mustard	cytosol	59.46	64.08
CDX73835	Canola	nucleus	60.96	63.04
CDX98955	Canola	cytoskeleton, cytosol, nucleus	58.56	62.7
CDX70068	Canola	cytoskeleton, cytosol, nucleus	51.95	61.35
Bra001437.1-P	Field mustard	cytoskeleton, cytosol, nucleus	60.36	60.18
AT5G06780.1	Thale cress	cytoskeleton, cytosol, nucleus	56.46	58.75
AT3G12140.3	Thale cress	cytosol	61.86	53.79
Bra038698.1-P	Field mustard	extracellular	60.36	52.34
CDY42126	Canola	cytosol	39.94	50.76
CDY50571	Canola	extracellular	60.66	50.25
KRG93077	Soybean	nucleus	61.26	48.8
KRH36326	Soybean	nucleus	45.35	47.63
GSMUA_Achr11P...	Banana	nucleus	34.83	46.22
KRH27522	Soybean	nucleus	60.06	45.87
KRH36382	Soybean	nucleus	59.76	42.34
Zm00001d019922_P003	Maize	nucleus	57.06	42.04
OQU89150	Sorghum	nucleus	56.76	41.63
KRH13882	Soybean	nucleus	54.05	41.57
Os08t0328300-02	Rice	nucleus	57.06	41.48
KRH43436	Soybean	cytosol	53.45	40.55
HORVU5Hr1G053150.1	Barley	nucleus, plastid	56.76	39.96
Zm00001d005106_P005	Maize	mitochondrion	55.26	39.91
TraesCS5D01G177600.1	Wheat	nucleus	56.46	39.66
EES14911	Sorghum	nucleus	54.65	39.65
TraesCS5B01G170500.1	Wheat	nucleus	56.16	39.45
TraesCS5A01G173100.1	Wheat	nucleus, plastid	55.86	39.24
Zm00001d050116_P003	Maize	nucleus	51.65	37.55
Solyc03g063280.2.1	Tomato	nucleus	51.35	37.25
Os09t0279000-01	Rice	mitochondrion	57.66	37.21
PGSC0003DMT400046911	Potato	cytoskeleton, cytosol, nucleus	15.92	33.54
CDY00757	Canola	cytosol	61.26	28.98
KRG94907	Soybean	cytosol	23.72	24.84
KXG35268	Sorghum	mitochondrion, nucleus	45.35	24.39

Protein Annotations

Gene3D:1.10.1240.40	EntrezGene:100781999	MapMan:35.1	EMBL:ACUP02005619	InterPro:Agenet_dom_plant	ncoils:Coil
InterPro:EMSY-LIKE_plant	InterPro:ENT_dom	InterPro:ENT_dom-like_sf	EnsemblPlantsGene:GLYMA_09G112500	GO:GO:0006950	GO:GO:0008150
GO:GO:0009605	GO:GO:0009607	GO:GO:0050832	UniProt:I1L2N2	InterPro:IPR005491	EnsemblPlants:KRH38126
ProteinID:KRH38126	ProteinID:KRH38126.1	PFAM:PF03735	PFscan:PS51138	PANTHER:PTHR33432	PANTHER:PTHR33432:SF7
SMART:SM00743	SMART:SM01191	SUPFAM:SSF158639	SUPFAM:SSF63748	UniParc:UPI00023C9A9A	SEG:seg

Description

hypothetical protein

Coordinates

chr9:-:22344860..22351170

Molecular Weight (calculated)

37029.1 Da

IEP (calculated)

6.456

GRAVY (calculated)

-0.738

Length

333 amino acids

Sequence
(BLAST)

001: MEAQIHLLEQ EAYSAVLRAF KAQSDALTWE KEGLITELRK ELRVSDDEHR ELLTRVNSDE IIHRIREWRQ TGCYQPARRS TSQPGHDILP SPTVSASRKK
101: QKTSHSGQSL PALSSVKSVQ YTSAGPTGGR HFANRSSSAL ASNVPAEAAA FDPLIGKKVW TRWPEDNHFY EAVVTDYNPA DGRHALVYDI NKVNETWEWV
201: DLKEISPEDI RWEGEDPGVL HRGGHGGQGR GGRKFFGHGG DSLGAGRGRG HPRFQARQEF LPPQNGIGRR VLDDIELLNT DSLVKEVERI FASSPPDSME
301: LEKAKQMLKE HEQALVDAIA RIADASDGES GNS

Best Arabidopsis Sequence Match ( AT3G12140.3 )
(BLAST)

001: METQIHQLEQ EAYTAVLRAF KAQSDAISWE KESLITELRK ELRVSDDEHR ELLSRVNKDD TIQRIRDWRQ GGASQITRHA TIQPFDVLPS PTFSAARKKQ
101: KTFPSYNPSI GATGNRSFNN RLVSSGISGN ESAEALIGRK VWTKWPEDNH FYEAIITQYN ADEGRHALVY DIHAANETWE WVDLKEIPPE DIRWDGEESG
201: VALNIGHGSA SFRGNRRGQI HGGRGRGPRI HQPRRELVPP PTQQNGSGGR RTSSDDIELF NTDSLVKEVE RVFDSTHPDP LELDKAKKML KEHEQALIAA
301: IARLADTSDG EMGNNNKSTL RLVCNLRIIY YLPLNFCVMM IISSIITNLI LGKIIRELIH TCSACDFSVT CKQLNSLKYR SSS

Arabidopsis Description

EML1 [Source:UniProtKB/TrEMBL;Acc:A0A178VB56]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.