CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36326	Soybean	nucleus	58.13	76.66
KRH38126	Soybean	nucleus	48.8	61.26
CDX70488	Canola	nucleus	55.74	60.68
Bra006175.1-P	Field mustard	nucleus	55.74	60.52
Bra008863.1-P	Field mustard	nucleus	56.7	60.15
CDX78501	Canola	nucleus	55.5	59.79
CDX85675	Canola	nucleus	55.74	59.59
CDX97218	Canola	nucleus	57.66	58.35
AT5G13020.1	Thale cress	nucleus	55.26	58.19
GSMUA_AchrUn_...	Banana	nucleus	53.59	58.18
CDX69677	Canola	nucleus	57.18	57.87
VIT_06s0004g01350.t01	Wine grape	nucleus	61.96	54.53
GSMUA_Achr4P13240_001	Banana	nucleus	61.48	52.56
KRH27522	Soybean	nucleus	53.83	51.61
GSMUA_Achr3P11710_001	Banana	nucleus	57.18	48.98
KRH36382	Soybean	nucleus	55.02	48.94
KRH13882	Soybean	nucleus	49.76	48.04
KRH43436	Soybean	cytosol	49.28	46.92
GSMUA_Achr4P11340_001	Banana	cytosol	40.19	46.15
KRH71929	Soybean	nucleus	46.65	45.99
Os08t0328300-02	Rice	nucleus	50.24	45.85
EES14911	Sorghum	nucleus	50.0	45.53
OQU89150	Sorghum	nucleus	48.56	44.71
HORVU5Hr1G053150.1	Barley	nucleus, plastid	49.76	43.97
TraesCS5A01G173100.1	Wheat	nucleus, plastid	49.28	43.46
TraesCS5B01G170500.1	Wheat	nucleus	49.28	43.46
TraesCS5D01G177600.1	Wheat	nucleus	49.28	43.46
Zm00001d050116_P003	Maize	nucleus	47.61	43.45
Zm00001d019922_P003	Maize	nucleus	46.65	43.14
Zm00001d005106_P005	Maize	mitochondrion	46.89	42.52
Bra023388.1-P	Field mustard	cytosol	56.46	40.55
Os09t0279000-01	Rice	mitochondrion	47.85	38.76
CDX91150	Canola	nucleus	56.22	34.41
GSMUA_Achr7P06400_001	Banana	cytosol	57.89	33.89
KRG94907	Soybean	cytosol	21.29	27.99
KXG35268	Sorghum	mitochondrion, nucleus	38.52	26.01

Protein Annotations

Gene3D:1.10.1240.40	EntrezGene:100811828	MapMan:35.1	EMBL:ACUP02012779	InterPro:Agenet_dom_plant	ncoils:Coil
InterPro:EMSY-LIKE_plant	InterPro:ENT_dom	InterPro:ENT_dom-like_sf	EnsemblPlantsGene:GLYMA_20G246900	GO:GO:0006950	GO:GO:0008150
GO:GO:0009605	GO:GO:0009607	GO:GO:0050832	InterPro:IPR005491	UniProt:K7N5H7	EnsemblPlants:KRG93077
ProteinID:KRG93077	ProteinID:KRG93077.1	PFAM:PF03735	PFscan:PS51138	PANTHER:PTHR33432	PANTHER:PTHR33432:SF6
SMART:SM00743	SMART:SM01191	SUPFAM:SSF158639	SUPFAM:SSF63748	UniParc:UPI00023DBEF0	SEG:seg

Description

hypothetical protein

Coordinates

chr20:+:47668791..47673531

Molecular Weight (calculated)

45918.6 Da

IEP (calculated)

6.941

GRAVY (calculated)

-0.858

Length

418 amino acids

Sequence
(BLAST)

001: MQNDMETQIH NIEQEAYTSV LRAFKAQSDA ITWEKESLIT ELRKELRVSD EEHRELLSRV NADDIIHNIR EWRKGNGLQS GAVNTAQQVH DHNTSPTILA
101: SRKKQKKSQS VASLSLGAPS PAVHPSMQPS SSALKHGPPS GTKTKKQKSF PSTGLTSQSQ VTNQGGSSGA FATKGPAEAA SYDPWIGRKV WTRWPEDNHF
201: YEAVITDYNA AEGLHALVYD MNSANETWEW VNLKEISPED ILWEGEDPGI SHKGCQPGPG RGLKKSMPHG GAVTGAGRGR GMMKVQPKKD FTLSQKGGRK
301: KATNDIEILH TDTLIKEVEK VFTASHPDPM EIEKAKKMLK EHEQALVNAI ARLGDVSEGE SDGEPPFSQG LSMDQEKRWK KQQYNSGGVG VPDGSNGDKL
401: QRETSAPSEY PHEVGNNA

Best Arabidopsis Sequence Match ( AT5G13020.1 )
(BLAST)

001: MDYRPSDSSG TDDDLPPSHQ GRYQRNARPT GNGRPSVLNS APLSRVHNEM ETQIHLIEQE AYSSILRAFK AQSDAITWEK ESLITELRKE LRVSDEEHRE
101: LLSRVNADEM IRRIREWRKA NSLQSSVPQL VHDAPSPAVS GSRKKQKTSQ SIASLAMGPP SPSLHPSMQP SSSALRRGGP PPGPKTKKPK TSMQYPSTGI
201: AGRPQAGALT NEPGESGSYD PLVGRKVWTK WPDDNQYYEA VITDYNPVEG RHALVYDINS ANETWEWVNL KEISPGDIRW EGEDPGISRK GGHPGQGRGT
301: KTMARGGPAS NAGGRGRGSM RMQQPKTQNG IGKKALGEIE ILHTETLLKE VEKVFGSVNP NPAEVEKAKR VLRDHELALM DAIAKLEEIS DGESGNI

Arabidopsis Description

EML3EML3 [Source:UniProtKB/TrEMBL;Acc:A0A178UIH0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.