Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70488 | Canola | nucleus | 95.88 | 96.88 |
| Bra006175.1-P | Field mustard | nucleus | 93.3 | 94.03 |
| AT5G13020.1 | Thale cress | nucleus | 84.79 | 82.87 |
| CDX85675 | Canola | nucleus | 82.73 | 82.1 |
| CDX97218 | Canola | nucleus | 86.86 | 81.6 |
| CDX69677 | Canola | nucleus | 86.08 | 80.87 |
| CDY17848 | Canola | cytoskeleton, cytosol, nucleus | 22.94 | 72.36 |
| KRH36326 | Soybean | nucleus | 47.42 | 58.04 |
| KRG93077 | Soybean | nucleus | 59.79 | 55.5 |
| CDX98955 | Canola | cytoskeleton, cytosol, nucleus | 43.3 | 54.02 |
| CDX70068 | Canola | cytoskeleton, cytosol, nucleus | 39.18 | 53.9 |
| VIT_06s0004g01350.t01 | Wine grape | nucleus | 65.46 | 53.47 |
| CDX73835 | Canola | nucleus | 43.81 | 52.8 |
| GSMUA_AchrUn_... | Banana | nucleus | 50.0 | 50.39 |
| CDY68247 | Canola | nucleus | 49.74 | 48.49 |
| GSMUA_Achr4P13240_001 | Banana | nucleus | 60.31 | 47.85 |
| Os08t0328300-02 | Rice | nucleus | 55.41 | 46.94 |
| CDX91150 | Canola | nucleus | 81.96 | 46.56 |
| HORVU5Hr1G053150.1 | Barley | nucleus, plastid | 54.9 | 45.03 |
| Zm00001d019922_P003 | Maize | nucleus | 52.32 | 44.91 |
| EES14911 | Sorghum | nucleus | 53.09 | 44.88 |
| TraesCS5D01G177600.1 | Wheat | nucleus | 54.12 | 44.3 |
| OQU89150 | Sorghum | nucleus | 51.8 | 44.27 |
| TraesCS5B01G170500.1 | Wheat | nucleus | 53.87 | 44.09 |
| CDY50571 | Canola | extracellular | 45.1 | 43.53 |
| TraesCS5A01G173100.1 | Wheat | nucleus, plastid | 53.09 | 43.46 |
| Zm00001d005106_P005 | Maize | mitochondrion | 51.55 | 43.38 |
| Zm00001d050116_P003 | Maize | nucleus | 51.03 | 43.23 |
| CDY17849 | Canola | plastid | 32.47 | 43.15 |
| CDY42126 | Canola | cytosol | 29.12 | 43.13 |
| GSMUA_Achr3P11710_001 | Banana | nucleus | 52.84 | 42.01 |
| Os09t0279000-01 | Rice | mitochondrion | 53.61 | 40.31 |
| GSMUA_Achr4P11340_001 | Banana | cytosol | 36.34 | 38.74 |
| CDX95603 | Canola | nucleus | 49.48 | 33.68 |
| GSMUA_Achr7P06400_001 | Banana | cytosol | 60.31 | 32.77 |
| CDX83427 | Canola | nucleus | 43.81 | 32.02 |
| KXG35268 | Sorghum | mitochondrion, nucleus | 42.53 | 26.66 |
| CDY00757 | Canola | cytosol | 46.91 | 25.85 |
| CDY45580 | Canola | mitochondrion | 21.91 | 25.45 |
Protein Annotations
| Gene3D:1.10.1240.40 | MapMan:35.1 | EnsemblPlants:CDX78501 | ProteinID:CDX78501 | ProteinID:CDX78501.1 | ncoils:Coil |
| InterPro:EMSY-LIKE_plant | InterPro:ENT_dom | InterPro:ENT_dom-like_sf | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009605 |
| GO:GO:0009607 | GO:GO:0050832 | EnsemblPlantsGene:GSBRNA2T00129901001 | InterPro:IPR005491 | PFAM:PF03735 | PFscan:PS51138 |
| PANTHER:PTHR33432 | PANTHER:PTHR33432:SF6 | SMART:SM01191 | SUPFAM:SSF158639 | SUPFAM:SSF63748 | UniParc:UPI0004EE0DE6 |
| SEG:seg | : | : | : | : | : |
Description
BnaA03g04130D
Coordinates
chrLK031815:-:1032277..1035465
Molecular Weight (calculated)
42607.0 Da
IEP (calculated)
9.136
GRAVY (calculated)
-0.915
Length
388 amino acids
Sequence
(BLAST)
(BLAST)
001: MDYRPSDSSG TDDDLPPSHQ NRYQRSGRPA GNGRPSVLSS APLSRAHNDM ETQIHLIEQE AYSSILRAFK AQSDAITWEK ESLITELRKE LRVSDEEHRE
101: LLSRVNADEM IRRIREWRKG NSVPQMVHDN APSPAVSGSR KKQKTSQSMG PPSPALHPSM QPSSSALRRG GPPPPGPKTK KPKTPMQFPA TGIAGRPQGG
201: ALTNEPGEAG SYDPLIGKKV WTKWPEDNNF YEAVITNYDP IEGRHALVYD ISTPNETWEW VNLKEISPGD IRWEGEDSGV SRKGGHPGQG RGSSTKAMPR
301: GGPSGRGRGN MKIQPHKAQN GIGKKALGDI EILHTDTLIK EIEKVFGSVN PNPAEVEKAK RVLRDHEQAL VDAIAKLEEL SDGESGNI
101: LLSRVNADEM IRRIREWRKG NSVPQMVHDN APSPAVSGSR KKQKTSQSMG PPSPALHPSM QPSSSALRRG GPPPPGPKTK KPKTPMQFPA TGIAGRPQGG
201: ALTNEPGEAG SYDPLIGKKV WTKWPEDNNF YEAVITNYDP IEGRHALVYD ISTPNETWEW VNLKEISPGD IRWEGEDSGV SRKGGHPGQG RGSSTKAMPR
301: GGPSGRGRGN MKIQPHKAQN GIGKKALGDI EILHTDTLIK EIEKVFGSVN PNPAEVEKAK RVLRDHEQAL VDAIAKLEEL SDGESGNI
001: MDYRPSDSSG TDDDLPPSHQ GRYQRNARPT GNGRPSVLNS APLSRVHNEM ETQIHLIEQE AYSSILRAFK AQSDAITWEK ESLITELRKE LRVSDEEHRE
101: LLSRVNADEM IRRIREWRKA NSLQSSVPQL VHDAPSPAVS GSRKKQKTSQ SIASLAMGPP SPSLHPSMQP SSSALRRGGP PPGPKTKKPK TSMQYPSTGI
201: AGRPQAGALT NEPGESGSYD PLVGRKVWTK WPDDNQYYEA VITDYNPVEG RHALVYDINS ANETWEWVNL KEISPGDIRW EGEDPGISRK GGHPGQGRGT
301: KTMARGGPAS NAGGRGRGSM RMQQPKTQNG IGKKALGEIE ILHTETLLKE VEKVFGSVNP NPAEVEKAKR VLRDHELALM DAIAKLEEIS DGESGNI
101: LLSRVNADEM IRRIREWRKA NSLQSSVPQL VHDAPSPAVS GSRKKQKTSQ SIASLAMGPP SPSLHPSMQP SSSALRRGGP PPGPKTKKPK TSMQYPSTGI
201: AGRPQAGALT NEPGESGSYD PLVGRKVWTK WPDDNQYYEA VITDYNPVEG RHALVYDINS ANETWEWVNL KEISPGDIRW EGEDPGISRK GGHPGQGRGT
301: KTMARGGPAS NAGGRGRGSM RMQQPKTQNG IGKKALGEIE ILHTETLLKE VEKVFGSVNP NPAEVEKAKR VLRDHELALM DAIAKLEEIS DGESGNI
Arabidopsis Description
EML3EML3 [Source:UniProtKB/TrEMBL;Acc:A0A178UIH0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.