Subcellular Localization
min:
: max
Winner_takes_all: cytoskeleton, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70488 | Canola | nucleus | 72.36 | 23.18 |
| CDY68247 | Canola | nucleus | 74.8 | 23.12 |
| CDX78501 | Canola | nucleus | 72.36 | 22.94 |
| CDX85675 | Canola | nucleus | 70.73 | 22.25 |
| AT2G44440.1 | Thale cress | nucleus | 77.24 | 22.14 |
| CDX69677 | Canola | nucleus | 73.17 | 21.79 |
| CDX97218 | Canola | nucleus | 73.17 | 21.79 |
| VIT_13s0156g00360.t01 | Wine grape | nucleus | 73.17 | 20.79 |
| Solyc01g073960.2.1 | Tomato | nucleus | 71.54 | 20.61 |
| PGSC0003DMT400016200 | Potato | nucleus | 71.54 | 20.56 |
| KRH27522 | Soybean | nucleus | 72.36 | 20.41 |
| KRH43436 | Soybean | cytosol | 69.92 | 19.59 |
| Solyc10g044960.1.1 | Tomato | nucleus | 68.29 | 19.44 |
| KRH36382 | Soybean | nucleus | 72.36 | 18.94 |
| KRH13882 | Soybean | nucleus | 62.6 | 17.78 |
| PGSC0003DMT400053543 | Potato | nucleus | 56.91 | 17.77 |
| CDX70068 | Canola | cytoskeleton, cytosol, nucleus | 40.65 | 17.73 |
| Solyc06g009900.1.1 | Tomato | nucleus | 56.1 | 17.65 |
| CDX73835 | Canola | nucleus | 45.53 | 17.39 |
| EES14911 | Sorghum | nucleus | 62.6 | 16.78 |
| Os08t0328300-02 | Rice | nucleus | 60.98 | 16.38 |
| CDX98955 | Canola | cytoskeleton, cytosol, nucleus | 40.65 | 16.08 |
| TraesCS5D01G177600.1 | Wheat | nucleus | 61.79 | 16.03 |
| CDY42126 | Canola | cytosol | 34.15 | 16.03 |
| HORVU5Hr1G053150.1 | Barley | nucleus, plastid | 60.98 | 15.86 |
| TraesCS5B01G170500.1 | Wheat | nucleus | 60.98 | 15.82 |
| OQU89150 | Sorghum | nucleus | 57.72 | 15.64 |
| Zm00001d050116_P003 | Maize | nucleus | 57.72 | 15.5 |
| Zm00001d019922_P003 | Maize | nucleus | 56.91 | 15.49 |
| CDX95603 | Canola | nucleus | 71.54 | 15.44 |
| TraesCS5A01G173100.1 | Wheat | nucleus, plastid | 59.35 | 15.4 |
| Os09t0279000-01 | Rice | mitochondrion | 60.16 | 14.34 |
| Zm00001d005106_P005 | Maize | mitochondrion | 53.66 | 14.32 |
| CDY50571 | Canola | extracellular | 45.53 | 13.93 |
| CDX91150 | Canola | nucleus | 69.11 | 12.45 |
| CDX83427 | Canola | nucleus | 52.85 | 12.24 |
| KXG35268 | Sorghum | mitochondrion, nucleus | 53.66 | 10.66 |
| CDY00757 | Canola | cytosol | 53.66 | 9.38 |
| CDY45580 | Canola | mitochondrion | 17.07 | 6.29 |
| CDY17849 | Canola | plastid | 2.44 | 1.03 |
| GSMUA_Achr11P... | Banana | plastid | 1.63 | 0.85 |
Protein Annotations
| Gene3D:1.10.1240.40 | MapMan:35.1 | UniProt:A0A078FZP6 | EnsemblPlants:CDY17848 | ProteinID:CDY17848 | ProteinID:CDY17848.1 |
| ncoils:Coil | InterPro:EMSY-LIKE_plant | InterPro:ENT_dom | InterPro:ENT_dom-like_sf | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0009605 | GO:GO:0009607 | GO:GO:0050832 | EnsemblPlantsGene:GSBRNA2T00002180001 | InterPro:IPR005491 | PFAM:PF03735 |
| PFscan:PS51138 | PANTHER:PTHR33432 | SMART:SM01191 | SUPFAM:SSF158639 | UniParc:UPI0004EDE980 | SEG:seg |
Description
BnaC04g03710DBnaC04g03710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FZP6]
Coordinates
chrLK032079:+:52364..53418
Molecular Weight (calculated)
14040.5 Da
IEP (calculated)
5.298
GRAVY (calculated)
-0.773
Length
123 amino acids
Sequence
(BLAST)
(BLAST)
001: MDYESFDSSG TDDDLPPSHR VARGGRVAGN GRPSSLLPPS YPKMYDEVAV DMEAQIHQIE KEAYISILRA FKAQADAITW EKESLITELR KELRVSNEEH
101: RELLGRVNAD DTIRRIRREA KNL
101: RELLGRVNAD DTIRRIRREA KNL
001: MDYRPSDSSG TDDDLPPSHQ GRYQRNARPT GNGRPSVLNS APLSRVHNEM ETQIHLIEQE AYSSILRAFK AQSDAITWEK ESLITELRKE LRVSDEEHRE
101: LLSRVNADEM IRRIREWRKA NSLQSSVPQL VHDAPSPAVS GSRKKQKTSQ SIASLAMGPP SPSLHPSMQP SSSALRRGGP PPGPKTKKPK TSMQYPSTGI
201: AGRPQAGALT NEPGESGSYD PLVGRKVWTK WPDDNQYYEA VITDYNPVEG RHALVYDINS ANETWEWVNL KEISPGDIRW EGEDPGISRK GGHPGQGRGT
301: KTMARGGPAS NAGGRGRGSM RMQQPKTQNG IGKKALGEIE ILHTETLLKE VEKVFGSVNP NPAEVEKAKR VLRDHELALM DAIAKLEEIS DGESGNI
101: LLSRVNADEM IRRIREWRKA NSLQSSVPQL VHDAPSPAVS GSRKKQKTSQ SIASLAMGPP SPSLHPSMQP SSSALRRGGP PPGPKTKKPK TSMQYPSTGI
201: AGRPQAGALT NEPGESGSYD PLVGRKVWTK WPDDNQYYEA VITDYNPVEG RHALVYDINS ANETWEWVNL KEISPGDIRW EGEDPGISRK GGHPGQGRGT
301: KTMARGGPAS NAGGRGRGSM RMQQPKTQNG IGKKALGEIE ILHTETLLKE VEKVFGSVNP NPAEVEKAKR VLRDHELALM DAIAKLEEIS DGESGNI
Arabidopsis Description
EML3EML3 [Source:UniProtKB/TrEMBL;Acc:A0A178UIH0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.