Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17848 | Canola | cytoskeleton, cytosol, nucleus | 22.14 | 77.24 |
| CDY17849 | Canola | plastid | 50.12 | 73.63 |
| CDY68247 | Canola | nucleus | 68.3 | 73.62 |
| Bra004832.1-P | Field mustard | cytosol | 64.57 | 67.56 |
| Solyc01g073960.2.1 | Tomato | nucleus | 56.41 | 56.67 |
| PGSC0003DMT400016200 | Potato | nucleus | 56.41 | 56.54 |
| KRH27522 | Soybean | nucleus | 55.24 | 54.36 |
| VIT_13s0156g00360.t01 | Wine grape | nucleus | 54.55 | 54.04 |
| Solyc10g044960.1.1 | Tomato | nucleus | 53.61 | 53.24 |
| CDX95603 | Canola | nucleus | 69.23 | 52.11 |
| AT5G13020.1 | Thale cress | nucleus | 47.55 | 51.39 |
| CDX83427 | Canola | nucleus | 63.17 | 51.04 |
| KRH36382 | Soybean | nucleus | 54.78 | 50.0 |
| KRH13882 | Soybean | nucleus | 49.65 | 49.19 |
| Bra000353.1-P | Field mustard | nucleus | 60.14 | 48.59 |
| KRH43436 | Soybean | cytosol | 49.65 | 48.52 |
| PGSC0003DMT400053543 | Potato | nucleus | 41.49 | 45.18 |
| AT5G06780.1 | Thale cress | cytoskeleton, cytosol, nucleus | 33.57 | 45.0 |
| Os08t0328300-02 | Rice | nucleus | 48.02 | 44.98 |
| Solyc06g009900.1.1 | Tomato | nucleus | 39.39 | 43.22 |
| EES14911 | Sorghum | nucleus | 45.69 | 42.7 |
| TraesCS5D01G177600.1 | Wheat | nucleus | 45.92 | 41.56 |
| AT3G12140.3 | Thale cress | cytosol | 37.06 | 41.51 |
| HORVU5Hr1G053150.1 | Barley | nucleus, plastid | 45.69 | 41.44 |
| TraesCS5B01G170500.1 | Wheat | nucleus | 45.69 | 41.35 |
| Zm00001d019922_P003 | Maize | nucleus | 42.89 | 40.71 |
| TraesCS5A01G173100.1 | Wheat | nucleus, plastid | 44.76 | 40.51 |
| OQU89150 | Sorghum | nucleus | 42.66 | 40.31 |
| Zm00001d050116_P003 | Maize | nucleus | 42.42 | 39.74 |
| Zm00001d005106_P005 | Maize | mitochondrion | 42.19 | 39.26 |
| Os09t0279000-01 | Rice | mitochondrion | 44.29 | 36.82 |
| Bra041089.1-P | Field mustard | cytosol | 22.84 | 32.67 |
| CDY45580 | Canola | mitochondrion | 24.24 | 31.14 |
| KXG35268 | Sorghum | mitochondrion, nucleus | 36.6 | 25.36 |
| GSMUA_Achr11P... | Banana | plastid | 13.75 | 25.0 |
Protein Annotations
| Gene3D:1.10.1240.40 | MapMan:35.1 | EntrezGene:819051 | ProteinID:AAC16090.1 | ProteinID:AEC10420.1 | EMBL:AK175816 |
| EMBL:AK176379 | ArrayExpress:AT2G44440 | EnsemblPlantsGene:AT2G44440 | RefSeq:AT2G44440 | TAIR:AT2G44440 | RefSeq:AT2G44440-TAIR-G |
| EnsemblPlants:AT2G44440.1 | TAIR:AT2G44440.1 | Unigene:At.50138 | EMBL:BT029007 | ncoils:Coil | InterPro:EMSY-LIKE_plant |
| InterPro:ENT_dom | InterPro:ENT_dom-like_sf | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006950 | GO:GO:0006952 | GO:GO:0008150 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0050832 |
| InterPro:IPR005491 | RefSeq:NP_181972.2 | PFAM:PF03735 | PO:PO:0000005 | PO:PO:0000037 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007098 |
| PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PFscan:PS51138 | PANTHER:PTHR33432 | UniProt:Q08A72 | SMART:SM01191 | SUPFAM:SSF158639 | SUPFAM:SSF63748 |
| UniParc:UPI000034EE8C | SEG:seg | : | : | : | : |
Description
EML4Protein EMSY-LIKE 4 [Source:UniProtKB/Swiss-Prot;Acc:Q08A72]
Coordinates
chr2:-:18336400..18339275
Molecular Weight (calculated)
47456.5 Da
IEP (calculated)
8.944
GRAVY (calculated)
-0.868
Length
429 amino acids
Sequence
(BLAST)
(BLAST)
001: MDCKSSDSSG TDDDLPPSHR VPRGGGGGRG GRVAGNGRPL NLPPSYPKMY DDLAADMEAQ IHQIEKEAYI SVLRAFKAQG DAISWEKESV ITELRKELSL
101: SNEEHRELLG RVNSDDTIRR IREWRQSGGM QPSMRNAAQV VHDTLPSPSV SASMKTHKPN QPIPSQPFAS SSPSFHPQAD PTHPFASSTA KRGPVPIVKG
201: KKHKPVFPGS SSTKHAPYHP SDQPPRGQVM NRLPSVPASS SEPTNGIDPE SFLGRRVRTK WPEDNTFYDA IITQYNPVEG RHALVYDIAT PSETWEWVRL
301: SEISPGDIEW IGEDPGLGNR YNGQGHGLNR TTGPNCVPQR GSGLEKNTIR KGFRTSQNGT GKKKHLDIRI RQTDVLIREV ERVLRSHNPD PYEVERAKRV
401: LEEHEHALVG AIAKLGDISD GENEGAFRR
101: SNEEHRELLG RVNSDDTIRR IREWRQSGGM QPSMRNAAQV VHDTLPSPSV SASMKTHKPN QPIPSQPFAS SSPSFHPQAD PTHPFASSTA KRGPVPIVKG
201: KKHKPVFPGS SSTKHAPYHP SDQPPRGQVM NRLPSVPASS SEPTNGIDPE SFLGRRVRTK WPEDNTFYDA IITQYNPVEG RHALVYDIAT PSETWEWVRL
301: SEISPGDIEW IGEDPGLGNR YNGQGHGLNR TTGPNCVPQR GSGLEKNTIR KGFRTSQNGT GKKKHLDIRI RQTDVLIREV ERVLRSHNPD PYEVERAKRV
401: LEEHEHALVG AIAKLGDISD GENEGAFRR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.