CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36382	Soybean	nucleus	95.64	88.72
KRH13882	Soybean	nucleus	75.23	75.75
KRH43436	Soybean	cytosol	75.92	75.4
VIT_13s0156g00360.t01	Wine grape	nucleus	74.77	75.29
PGSC0003DMT400016200	Potato	nucleus	71.56	72.9
Solyc01g073960.2.1	Tomato	nucleus	71.33	72.83
CDY17848	Canola	cytoskeleton, cytosol, nucleus	20.41	72.36
Solyc10g044960.1.1	Tomato	nucleus	70.18	70.83
KRH38126	Soybean	nucleus	45.87	60.06
PGSC0003DMT400053543	Potato	nucleus	54.13	59.9
Solyc06g009900.1.1	Tomato	nucleus	51.61	57.54
AT2G44440.1	Thale cress	nucleus	54.36	55.24
Os08t0328300-02	Rice	nucleus	57.8	55.02
KRH36326	Soybean	nucleus	39.68	54.57
CDY68247	Canola	nucleus	49.77	54.52
KRG93077	Soybean	nucleus	51.61	53.83
EES14911	Sorghum	nucleus	53.9	51.2
HORVU5Hr1G053150.1	Barley	nucleus, plastid	55.05	50.74
Bra004832.1-P	Field mustard	cytosol	47.48	50.49
TraesCS5B01G170500.1	Wheat	nucleus	54.82	50.42
TraesCS5D01G177600.1	Wheat	nucleus	54.82	50.42
OQU89150	Sorghum	nucleus	52.29	50.22
Zm00001d019922_P003	Maize	nucleus	51.38	49.56
Zm00001d050116_P003	Maize	nucleus	51.61	49.13
TraesCS5A01G173100.1	Wheat	nucleus, plastid	53.21	48.95
CDY17849	Canola	plastid	32.57	48.63
Zm00001d005106_P005	Maize	mitochondrion	50.23	47.51
KRH71929	Soybean	nucleus	44.5	45.75
Os09t0279000-01	Rice	mitochondrion	53.67	45.35
Bra000353.1-P	Field mustard	nucleus	46.33	38.04
CDX95603	Canola	nucleus	49.31	37.72
CDX83427	Canola	nucleus	44.72	36.72
GSMUA_Achr11P...	Banana	plastid	16.05	29.66
KRG94907	Soybean	cytosol	20.41	27.99
KXG35268	Sorghum	mitochondrion, nucleus	39.22	27.63
Bra041089.1-P	Field mustard	cytosol	18.12	26.33
CDY45580	Canola	mitochondrion	19.5	25.45

Protein Annotations

Gene3D:1.10.1240.40	EntrezGene:100791651	Gene3D:2.30.30.140	MapMan:35.1	EMBL:ACUP02007813	ncoils:Coil
InterPro:EMSY-LIKE_plant	InterPro:ENT_dom	InterPro:ENT_dom-like_sf	EnsemblPlantsGene:GLYMA_12G240400	GO:GO:0006950	GO:GO:0008150
GO:GO:0009605	GO:GO:0009607	GO:GO:0050832	UniProt:I1LVG3	InterPro:IPR005491	EnsemblPlants:KRH27522
ProteinID:KRH27522	ProteinID:KRH27522.1	PFAM:PF03735	PFscan:PS51138	PANTHER:PTHR33432	PANTHER:PTHR33432:SF6
SMART:SM01191	SUPFAM:SSF158639	SUPFAM:SSF63748	UniParc:UPI000233CEAF	SEG:seg	:

Description

hypothetical protein

Coordinates

chr12:+:39906977..39913939

Molecular Weight (calculated)

47531.2 Da

IEP (calculated)

7.223

GRAVY (calculated)

-0.848

Length

436 amino acids

Sequence
(BLAST)

001: MDYEPYDSSG TDDDLPPTHQ NRISRGGGGR LAGNGRSAVA SIPYPRMYGE IDMETQIHQL EQEAYSSVLR AFKAQADAIT WEKESLITEL RKELRLSNEE
101: HRELLGRVNA DDVIRRIREW RQAGGHQPGV LSTGQGLHDS IPSPTVSASR KKQKITPSVP PSRSFGGPSP PFHPQTVTAP HQPSSSAAKR GSAPGSKGKK
201: HKPGQILPGV SSMKQYPSSG PGGRNQVSNR AVMGEHAEGA SFDSLVGRRV RTRWPDDNNF YEAVITNYNP ADGRHNLVYD MGSANETWEW VNLSEISPED
301: IQWVGEDPGI NHRGGFGGPG HGMNRSVGRD GVPGAGRGRG AAKGQSRKDF LSSQNGLGKK VHDDIQILHT DTLIKEVERV FSANHPDPLE VEKAKKVLKD
401: HEQALIDAIA KLNDLSDGES DGAGHHFSHA QSMDRE

Best Arabidopsis Sequence Match ( AT2G44440.1 )
(BLAST)

001: MDCKSSDSSG TDDDLPPSHR VPRGGGGGRG GRVAGNGRPL NLPPSYPKMY DDLAADMEAQ IHQIEKEAYI SVLRAFKAQG DAISWEKESV ITELRKELSL
101: SNEEHRELLG RVNSDDTIRR IREWRQSGGM QPSMRNAAQV VHDTLPSPSV SASMKTHKPN QPIPSQPFAS SSPSFHPQAD PTHPFASSTA KRGPVPIVKG
201: KKHKPVFPGS SSTKHAPYHP SDQPPRGQVM NRLPSVPASS SEPTNGIDPE SFLGRRVRTK WPEDNTFYDA IITQYNPVEG RHALVYDIAT PSETWEWVRL
301: SEISPGDIEW IGEDPGLGNR YNGQGHGLNR TTGPNCVPQR GSGLEKNTIR KGFRTSQNGT GKKKHLDIRI RQTDVLIREV ERVLRSHNPD PYEVERAKRV
401: LEEHEHALVG AIAKLGDISD GENEGAFRR

Arabidopsis Description

EML4Protein EMSY-LIKE 4 [Source:UniProtKB/Swiss-Prot;Acc:Q08A72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.