CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000353.1-P	Field mustard	nucleus	93.97	93.97
CDX95603	Canola	nucleus	85.5	79.65
CDY17849	Canola	plastid	38.61	70.21
CDY68247	Canola	nucleus	52.54	70.1
AT2G44440.1	Thale cress	nucleus	51.04	63.17
CDY17848	Canola	cytoskeleton, cytosol, nucleus	12.24	52.85
Solyc01g073960.2.1	Tomato	nucleus	35.97	44.73
KRH27522	Soybean	nucleus	36.72	44.72
PGSC0003DMT400016200	Potato	nucleus	35.97	44.63
VIT_13s0156g00360.t01	Wine grape	nucleus	36.35	44.57
CDX85675	Canola	nucleus	32.58	44.25
CDX78501	Canola	nucleus	32.02	43.81
Solyc10g044960.1.1	Tomato	nucleus	35.59	43.75
CDX70488	Canola	nucleus	31.64	43.75
CDX69677	Canola	nucleus	32.77	42.13
CDX70068	Canola	cytoskeleton, cytosol, nucleus	22.03	41.49
CDX97218	Canola	nucleus	32.2	41.4
KRH36382	Soybean	nucleus	36.35	41.06
CDX73835	Canola	nucleus	24.86	40.99
KRH13882	Soybean	nucleus	33.33	40.88
KRH43436	Soybean	cytosol	33.52	40.55
CDX98955	Canola	cytoskeleton, cytosol, nucleus	23.54	40.19
PGSC0003DMT400053543	Potato	nucleus	28.63	38.58
Os08t0328300-02	Rice	nucleus	33.15	38.43
Solyc06g009900.1.1	Tomato	nucleus	27.31	37.08
Zm00001d019922_P003	Maize	nucleus	31.26	36.73
TraesCS5D01G177600.1	Wheat	nucleus	32.58	36.5
HORVU5Hr1G053150.1	Barley	nucleus, plastid	32.39	36.36
TraesCS5B01G170500.1	Wheat	nucleus	32.39	36.29
EES14911	Sorghum	nucleus	31.26	36.17
OQU89150	Sorghum	nucleus	30.7	35.9
TraesCS5A01G173100.1	Wheat	nucleus, plastid	31.83	35.65
Zm00001d005106_P005	Maize	mitochondrion	30.32	34.92
Zm00001d050116_P003	Maize	nucleus	29.76	34.5
CDY50571	Canola	extracellular	25.24	33.33
CDY42126	Canola	cytosol	16.2	32.82
CDY45580	Canola	mitochondrion	20.53	32.63
Os09t0279000-01	Rice	mitochondrion	31.26	32.17
CDX91150	Canola	nucleus	32.02	24.89
GSMUA_Achr11P...	Banana	plastid	10.55	23.73
KXG35268	Sorghum	mitochondrion, nucleus	26.55	22.78
CDY00757	Canola	cytosol	26.37	19.89

Protein Annotations

Gene3D:1.10.1240.40	Gene3D:2.30.30.140	MapMan:35.1	EnsemblPlants:CDX83427	ProteinID:CDX83427	ProteinID:CDX83427.1
InterPro:EMSY-LIKE_plant	InterPro:ENT_dom	InterPro:ENT_dom-like_sf	GO:GO:0006950	GO:GO:0008150	GO:GO:0009605
GO:GO:0009607	GO:GO:0050832	EnsemblPlantsGene:GSBRNA2T00139001001	InterPro:IPR005491	PFAM:PF03735	PFscan:PS51138
PANTHER:PTHR33432	SMART:SM01191	SUPFAM:SSF158639	SUPFAM:SSF63748	UniParc:UPI0004EDC232	SEG:seg

Description

BnaA03g20790D

Coordinates

chrLK031832:+:1509718..1512708

Molecular Weight (calculated)

60154.7 Da

IEP (calculated)

7.365

GRAVY (calculated)

-0.775

Length

531 amino acids

Sequence
(BLAST)

001: MDYESFDSSG TDDDLPPSHR VVPRGGIVSS NGRPSTLTPS HMYDQVAADM EAQIHHVEKE AYFSLLKAFR AQADAITWEK DGLITEMRKE EWRQSGGMQR
101: HAAQVVHDTL PSPCVSASIK RHKPNQPIPS QPFASSSPPQ ADPTHQFASW TAKRGLVPNV KDKKHKPVLP GSSSFKPIHN HPLDQPPRGQ VMNNRLPSGP
201: TSSSEPAKGT GPESFVGRRV RTRWPEDNAF YEAAITKYDP VEGRHALVYD IGTRNETWEW VKLAEISPRD IEWIGEDPGV SNRYGLNRTT GPNNVPQRGS
301: GLAKTTIKND LRTSQNGAGK RKHVDIRIRP TNVLIREVER VLSSHNPDPQ EVEMAKRVLE EQEHALVGAI TKLGDISNGE NGNFAKAQCN ADHEELLKKK
401: KTLVEMERQS LDFFDALVTS HQTHSLLLED GAFCLEKLYM DVENQEWSRK TFKYPRQWEG FGWHLRSNGL IHTGELMVFQ RSLEEAKPFC VYYYDFNKER
501: SRKVEIRGVE TDELQGSRLC YPGYVENIRF L

Best Arabidopsis Sequence Match ( AT2G44440.1 )
(BLAST)

001: MDCKSSDSSG TDDDLPPSHR VPRGGGGGRG GRVAGNGRPL NLPPSYPKMY DDLAADMEAQ IHQIEKEAYI SVLRAFKAQG DAISWEKESV ITELRKELSL
101: SNEEHRELLG RVNSDDTIRR IREWRQSGGM QPSMRNAAQV VHDTLPSPSV SASMKTHKPN QPIPSQPFAS SSPSFHPQAD PTHPFASSTA KRGPVPIVKG
201: KKHKPVFPGS SSTKHAPYHP SDQPPRGQVM NRLPSVPASS SEPTNGIDPE SFLGRRVRTK WPEDNTFYDA IITQYNPVEG RHALVYDIAT PSETWEWVRL
301: SEISPGDIEW IGEDPGLGNR YNGQGHGLNR TTGPNCVPQR GSGLEKNTIR KGFRTSQNGT GKKKHLDIRI RQTDVLIREV ERVLRSHNPD PYEVERAKRV
401: LEEHEHALVG AIAKLGDISD GENEGAFRR

Arabidopsis Description

EML4Protein EMSY-LIKE 4 [Source:UniProtKB/Swiss-Prot;Acc:Q08A72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.