Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G177600.1 | Wheat | nucleus | 98.95 | 98.95 |
| HORVU5Hr1G053150.1 | Barley | nucleus, plastid | 96.2 | 96.41 |
| TraesCS5A01G173100.1 | Wheat | nucleus, plastid | 95.78 | 95.78 |
| OQU89150 | Sorghum | nucleus | 69.62 | 72.69 |
| Zm00001d019922_P003 | Maize | nucleus | 67.09 | 70.35 |
| Os09t0279000-01 | Rice | mitochondrion | 75.11 | 68.99 |
| Zm00001d005106_P005 | Maize | mitochondrion | 63.5 | 65.29 |
| CDY17848 | Canola | cytoskeleton, cytosol, nucleus | 15.82 | 60.98 |
| KRH38126 | Soybean | nucleus | 39.45 | 56.16 |
| VIT_13s0156g00360.t01 | Wine grape | nucleus | 50.63 | 55.43 |
| KRH27522 | Soybean | nucleus | 50.42 | 54.82 |
| PGSC0003DMT400016200 | Potato | nucleus | 49.37 | 54.67 |
| Solyc10g044960.1.1 | Tomato | nucleus | 49.79 | 54.63 |
| Solyc01g073960.2.1 | Tomato | nucleus | 49.16 | 54.57 |
| GSMUA_Achr11P... | Banana | nucleus | 28.69 | 54.18 |
| CDX70488 | Canola | nucleus | 43.67 | 53.91 |
| CDX78501 | Canola | nucleus | 44.09 | 53.87 |
| CDX85675 | Canola | nucleus | 44.3 | 53.71 |
| Bra008863.1-P | Field mustard | nucleus | 44.51 | 53.55 |
| CDX70068 | Canola | cytoskeleton, cytosol, nucleus | 31.86 | 53.55 |
| Bra006175.1-P | Field mustard | nucleus | 43.46 | 53.51 |
| Bra009226.1-P | Field mustard | cytosol | 34.81 | 53.4 |
| AT5G13020.1 | Thale cress | nucleus | 44.51 | 53.15 |
| GSMUA_Achr4P13240_001 | Banana | nucleus | 54.22 | 52.56 |
| GSMUA_AchrUn_... | Banana | nucleus | 42.41 | 52.21 |
| CDX73835 | Canola | nucleus | 35.44 | 52.17 |
| CDX98955 | Canola | cytoskeleton, cytosol, nucleus | 33.76 | 51.45 |
| CDX69677 | Canola | nucleus | 44.73 | 51.33 |
| CDX97218 | Canola | nucleus | 44.51 | 51.09 |
| VIT_08s0007g06350.t01 | Wine grape | nucleus | 51.9 | 50.93 |
| KRH36382 | Soybean | nucleus | 50.42 | 50.85 |
| KRH43436 | Soybean | cytosol | 47.05 | 50.8 |
| Bra001437.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 35.44 | 50.3 |
| KRH36326 | Soybean | nucleus | 33.12 | 49.53 |
| KRG93077 | Soybean | nucleus | 43.46 | 49.28 |
| KRH13882 | Soybean | nucleus | 44.51 | 48.73 |
| VIT_06s0004g01350.t01 | Wine grape | nucleus | 48.73 | 48.63 |
| PGSC0003DMT400053543 | Potato | nucleus | 39.45 | 47.46 |
| AT5G06780.1 | Thale cress | cytoskeleton, cytosol, nucleus | 31.43 | 46.56 |
| CDY68247 | Canola | nucleus | 39.03 | 46.48 |
| AT2G44440.1 | Thale cress | nucleus | 41.35 | 45.69 |
| Solyc06g009900.1.1 | Tomato | nucleus | 37.55 | 45.52 |
| AT3G12140.3 | Thale cress | cytosol | 36.71 | 45.43 |
| Bra038698.1-P | Field mustard | extracellular | 36.71 | 45.31 |
| GSMUA_Achr3P11710_001 | Banana | nucleus | 46.62 | 45.29 |
| Bra004832.1-P | Field mustard | cytosol | 38.4 | 44.39 |
| TraesCS5B01G266000.1 | Wheat | nucleus | 36.71 | 44.39 |
| Solyc03g063280.2.1 | Tomato | nucleus | 41.98 | 43.36 |
| CDY50571 | Canola | extracellular | 36.71 | 43.28 |
| CDY17849 | Canola | plastid | 25.95 | 42.12 |
| KRH71929 | Soybean | nucleus | 37.55 | 41.98 |
| CDY42126 | Canola | cytosol | 22.57 | 40.84 |
| GSMUA_Achr4P11340_001 | Banana | cytosol | 31.22 | 40.66 |
| KXG35268 | Sorghum | mitochondrion, nucleus | 48.95 | 37.48 |
| GSMUA_Achr7P06400_001 | Banana | cytosol | 52.95 | 35.15 |
| Bra023388.1-P | Field mustard | cytosol | 41.77 | 34.02 |
| PGSC0003DMT400046911 | Potato | cytoskeleton, cytosol, nucleus | 11.18 | 33.54 |
| Bra000353.1-P | Field mustard | nucleus | 37.34 | 33.33 |
| CDX95603 | Canola | nucleus | 39.87 | 33.16 |
| CDX83427 | Canola | nucleus | 36.29 | 32.39 |
| CDX91150 | Canola | nucleus | 44.51 | 30.89 |
| GSMUA_Achr11P... | Banana | plastid | 14.35 | 28.81 |
| CDY00757 | Canola | cytosol | 37.13 | 25.0 |
| Bra041089.1-P | Field mustard | cytosol | 14.98 | 23.67 |
| CDY45580 | Canola | mitochondrion | 16.03 | 22.75 |
| TraesCS1B01G155200.1 | Wheat | nucleus | 16.46 | 12.6 |
Protein Annotations
| Gene3D:1.10.1240.40 | Gene3D:2.30.30.140 | MapMan:35.1 | ncoils:Coil | InterPro:EMSY-LIKE_plant | InterPro:ENT_dom |
| InterPro:ENT_dom-like_sf | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0050832 |
| InterPro:IPR005491 | InterPro:Lamin-B_rcpt_of_tudor | PFAM:PF03735 | PFAM:PF09465 | PFscan:PS51138 | PANTHER:PTHR33432 |
| PANTHER:PTHR33432:SF2 | SMART:SM01191 | SUPFAM:SSF158639 | SUPFAM:SSF63748 | EnsemblPlantsGene:TraesCS5B01G170500 | EnsemblPlants:TraesCS5B01G170500.1 |
| TIGR:cd04508 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr5B:-:315187788..315193214
Molecular Weight (calculated)
51499.1 Da
IEP (calculated)
9.284
GRAVY (calculated)
-0.918
Length
474 amino acids
Sequence
(BLAST)
(BLAST)
001: MEYGPSDSSG TDDDLPPPYP NNPNNRSIRG SGRASGNGRA IVPVSGNGRA IAPASSYPRA QTDMETQIQQ LEQEAYCAVL RAFKAQSDAL TWEKEGLITE
101: LRKELRVSDK EHREVLNRVN GDDIIRSIRE WRSTGGLQAS LPNNPQPIHH DPAPSPTTSG RKRQKTSQSV PPLPVPSPPV MHPQQMATPT QPSSSAAKKG
201: FLPGTKGKKT KPGQKIPGGS AVKSMPPTAG PSGRGPHMNR NFPGRPAAPE PSQGQHHLNP LIGRKVMSRW PEDNNFYEAT ITDYNAEKDV YALVYDINTA
301: NETWEWVDFK EIKPEDIIWQ GEDPGLYQGG RGAPGSGGKK STSRVMPTPG AGRGRGFQKN VSKKDFPRSQ NGVGKRSSDD IDILHTESLI KEVERVFSVS
401: HPDPLEVDKA KKALKEQEQS LIDAIARLAE ASDGESDERN RGRRMGPYGG HPHQGNYADA MAVDGDHMVG GAAT
101: LRKELRVSDK EHREVLNRVN GDDIIRSIRE WRSTGGLQAS LPNNPQPIHH DPAPSPTTSG RKRQKTSQSV PPLPVPSPPV MHPQQMATPT QPSSSAAKKG
201: FLPGTKGKKT KPGQKIPGGS AVKSMPPTAG PSGRGPHMNR NFPGRPAAPE PSQGQHHLNP LIGRKVMSRW PEDNNFYEAT ITDYNAEKDV YALVYDINTA
301: NETWEWVDFK EIKPEDIIWQ GEDPGLYQGG RGAPGSGGKK STSRVMPTPG AGRGRGFQKN VSKKDFPRSQ NGVGKRSSDD IDILHTESLI KEVERVFSVS
401: HPDPLEVDKA KKALKEQEQS LIDAIARLAE ASDGESDERN RGRRMGPYGG HPHQGNYADA MAVDGDHMVG GAAT
001: MDYRPSDSSG TDDDLPPSHQ GRYQRNARPT GNGRPSVLNS APLSRVHNEM ETQIHLIEQE AYSSILRAFK AQSDAITWEK ESLITELRKE LRVSDEEHRE
101: LLSRVNADEM IRRIREWRKA NSLQSSVPQL VHDAPSPAVS GSRKKQKTSQ SIASLAMGPP SPSLHPSMQP SSSALRRGGP PPGPKTKKPK TSMQYPSTGI
201: AGRPQAGALT NEPGESGSYD PLVGRKVWTK WPDDNQYYEA VITDYNPVEG RHALVYDINS ANETWEWVNL KEISPGDIRW EGEDPGISRK GGHPGQGRGT
301: KTMARGGPAS NAGGRGRGSM RMQQPKTQNG IGKKALGEIE ILHTETLLKE VEKVFGSVNP NPAEVEKAKR VLRDHELALM DAIAKLEEIS DGESGNI
101: LLSRVNADEM IRRIREWRKA NSLQSSVPQL VHDAPSPAVS GSRKKQKTSQ SIASLAMGPP SPSLHPSMQP SSSALRRGGP PPGPKTKKPK TSMQYPSTGI
201: AGRPQAGALT NEPGESGSYD PLVGRKVWTK WPDDNQYYEA VITDYNPVEG RHALVYDINS ANETWEWVNL KEISPGDIRW EGEDPGISRK GGHPGQGRGT
301: KTMARGGPAS NAGGRGRGSM RMQQPKTQNG IGKKALGEIE ILHTETLLKE VEKVFGSVNP NPAEVEKAKR VLRDHELALM DAIAKLEEIS DGESGNI
Arabidopsis Description
EML3EML3 [Source:UniProtKB/TrEMBL;Acc:A0A178UIH0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.