Factsheet for TraesCS1A01G372400.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G521600.1
TraesCS2B01G551100.1
TraesCS2D01G523400.1
TraesCS3A01G302600.1
TraesCS3B01G333800.1
TraesCS3D01G299200.1
TraesCS6A01G274500.1
TraesCS6B01G302000.1
TraesCS6D01G254800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G30490.1	TraesCS2A01G521600.1	AT1G14340.1	21798944
AT4G30490.1	TraesCS2B01G551100.1	AT1G14340.1	21798944
AT4G30490.1	TraesCS2D01G523400.1	AT1G14340.1	21798944
AT4G30490.1	TraesCS6A01G274500.1	AT3G27960.1	21798944
AT4G30490.1	TraesCS6B01G302000.1	AT3G27960.1	21798944
AT4G30490.1	TraesCS6D01G254800.1	AT3G27960.1	21798944
AT4G30490.1	TraesCS3A01G302600.1	AT5G61010.1	21798944
AT4G30490.1	TraesCS3B01G333800.1	AT5G61010.1	21798944
AT4G30490.1	TraesCS3D01G299200.1	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G082690.6	Barley	mitochondrion	94.64	94.27
TraesCS1D01G379000.4	Wheat	mitochondrion	95.04	94.11
TraesCS1B01G392400.1	Wheat	mitochondrion	95.04	94.11
KXG26754	Sorghum	plastid	81.35	80.55
Zm00001d002967_P005	Maize	mitochondrion	80.16	80.16
Zm00001d025892_P003	Maize	mitochondrion, plastid	80.16	79.37
EES13629	Sorghum	plastid	79.56	78.78
Os08t0265500-01	Rice	mitochondrion	27.78	77.35
Bra024072.1-P	Field mustard	cytosol	55.95	71.57
GSMUA_Achr3P28020_001	Banana	mitochondrion	67.06	69.26
GSMUA_Achr1P10190_001	Banana	mitochondrion	66.47	65.43
AT4G28070.2	Thale cress	mitochondrion	61.11	65.12
Bra026286.1-P	Field mustard	mitochondrion	60.12	63.92
Solyc07g006160.2.1	Tomato	mitochondrion	63.69	63.82
CDY19007	Canola	mitochondrion	60.12	63.66
CDX89206	Canola	mitochondrion	60.12	63.66
VIT_11s0037g00990.t01	Wine grape	mitochondrion	63.49	63.49
PGSC0003DMT400029004	Potato	mitochondrion	63.1	63.22
CDX72246	Canola	mitochondrion	61.31	61.92
KRH02973	Soybean	mitochondrion	61.51	61.63
KRH72370	Soybean	mitochondrion	61.11	61.48
CDY39208	Canola	mitochondrion	61.11	61.48
AT4G30490.1	Thale cress	mitochondrion	59.92	60.76
TraesCS3A01G054200.1	Wheat	mitochondrion	26.59	22.11

Protein Annotations

EnsemblPlants:TraesCS1A01G372400.2	EnsemblPlantsGene:TraesCS1A01G372400	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	InterPro:ATPase_AFG1-like	InterPro:P-loop_NTPase	ncoils:Coil	PANTHER:PTHR12169	PANTHER:PTHR12169:SF6
PFAM:PF03969	SEG:seg	SUPFAM:SSF52540	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr1A:-:548941369..548944886

Molecular Weight (calculated)

57042.0 Da

IEP (calculated)

6.576

GRAVY (calculated)

-0.363

Length

504 amino acids

Sequence
(BLAST)

001: MRATVARSLR QLRRLARHHA EGRAPINRLT RQQNALILRS SASRSLCTVR QNDEHGRFVS PAVESLRNMF STAAADSIKD VPRGGPMVEY EKRIASGDLV
101: DGDSFQVDTI QQLQRLYEDL VENEEACQLD RYQSSEKSGR RRWLWSRLIA QPSTQSPVKG LYLYGGVGTG KTMLMDLFYE QLPANWRKKR IHFHDFMLNV
201: HSRLQMHKGV SDPLDMVAAE ISDEAIILCL DEFMVTDVAD AMILNRLFRH LFSKGVILVS TSNRAPDQLY EGGLQRNLFL PFIDTLKERC ISHPIGSAVD
301: YRQLGSAGEG FYFIGNDCST VLKQKFQSLI GDEEPTPQTV EVVMGRHLQV PLGANGCAYF QFEDLCDRPI GAADYFGLFK KFHTLAVEGV PKFGYHNRTA
401: AYRFVTLVDV MYENKARLLC TAEAEPIELF ENIVTVAEAQ KSAPRSSRSR KSDDPDLCVD NELGFAKDRT ISRLTELNSR EYLEDFEAKW QQPLHDDGGD
501: VVLA

Best Arabidopsis Sequence Match ( AT4G28070.2 )
(BLAST)

001: MRLLLLSLRR VTLFSRHQRY AFAPIHNCLI SINPSTSSSS LFSASSFCSS PHSNGDGKIA GPLVEYERRI VAGELLDGDL CQLGTLRELQ RLYDELVQSA
101: DACRLDRYSA SAKSTRSNWF WNKFVSHSSV SPVKGLYLYG GVGTGKTMLM DLFFHQLPAS WRTQRIHFHN FMLSVHSRLQ KHKGLEDPLE VVGLEIADEA
201: ILLCLDEFMV NDVADALILN RLFRHLFNNG IILVATSNRA PDNLYEGGLQ RDLFLPFIST LKERCVVREI GSSVDYRKLT SAEEGFYFIG KDISGLLKQK
301: FQLLVGDQPA GPQVVEVVMG RKLQVPLAAD GCAYFLFEEL CDRPLGAADY LGLFKKFHTL ALEGVPFFGL HNRTAAYRFV TLVDVMYENK ARLLCTAEGS
401: PLELLERIVT ISDAQQIAPR TSSRSRKSDD PDLCVDNELG FAKDRTISRL TEMNSKEYLE QHSRMLQEKQ PSS

Arabidopsis Description

AFG1-like ATPase family protein [Source:UniProtKB/TrEMBL;Acc:Q5XET7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.