Factsheet for PGSC0003DMT400029004

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001405
PGSC0003DMT400063083
PGSC0003DMT400065786

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G30490.1	PGSC0003DMT400065786	AT1G14340.1	21798944
AT4G30490.1	PGSC0003DMT400001405	AT3G27960.1	21798944
AT4G30490.1	PGSC0003DMT400063083	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g006160.2.1	Tomato	mitochondrion	96.62	96.62
Bra024072.1-P	Field mustard	cytosol	61.03	77.92
VIT_11s0037g00990.t01	Wine grape	mitochondrion	72.37	72.22
AT4G28070.2	Thale cress	mitochondrion	66.8	71.04
Bra026286.1-P	Field mustard	mitochondrion	66.2	70.25
CDX89206	Canola	mitochondrion	66.4	70.17
CDY19007	Canola	mitochondrion	66.2	69.96
CDY39208	Canola	mitochondrion	66.0	66.27
KRH02973	Soybean	mitochondrion	66.2	66.2
KRH72370	Soybean	mitochondrion	65.81	66.07
CDX72246	Canola	mitochondrion	65.41	65.93
AT4G30490.1	Thale cress	mitochondrion	64.81	65.59
Zm00001d002967_P005	Maize	mitochondrion	65.61	65.48
GSMUA_Achr3P28020_001	Banana	mitochondrion	63.42	65.37
KXG26754	Sorghum	plastid	66.0	65.23
Zm00001d025892_P003	Maize	mitochondrion, plastid	65.81	65.03
GSMUA_Achr1P10190_001	Banana	mitochondrion	65.21	64.06
EES13629	Sorghum	plastid	64.21	63.46
TraesCS1A01G372400.2	Wheat	mitochondrion	63.22	63.1
TraesCS1B01G392400.1	Wheat	mitochondrion	62.03	61.3
HORVU1Hr1G082690.6	Barley	mitochondrion	61.63	61.26
TraesCS1D01G379000.4	Wheat	mitochondrion	61.63	60.9
Os08t0265500-01	Rice	mitochondrion	16.1	44.75
PGSC0003DMT400052752	Potato	cytosol	21.27	23.06

Protein Annotations

EnsemblPlants:PGSC0003DMT400029004	EnsemblPlantsGene:PGSC0003DMG400011163	EntrezGene:102592759	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:ATPase_AFG1-like	InterPro:P-loop_NTPase	ncoils:Coil	PANTHER:PTHR12169
PANTHER:PTHR12169:SF6	PFAM:PF03969	PGSC:PGSC0003DMG400011163	RefSeq:XP_006343575.1	RefSeq:XP_006343576.1	RefSeq:XP_006343577.1
SUPFAM:SSF52540	UniParc:UPI0002956701	UniProt:M1AS25	MapMan:35.2	:	:

Description

ATPase [Source:PGSC_GENE;Acc:PGSC0003DMG400011163]

Coordinates

chr7:+:1516823..1523538

Molecular Weight (calculated)

56922.8 Da

IEP (calculated)

8.084

GRAVY (calculated)

-0.193

Length

503 amino acids

Sequence
(BLAST)

001: MRKVLQSVRQ IKSALRYRKD NVISSLVRRQ YFSTDISHGC LCKLSYNGGI TRVSQPYYML SRAMFADVAT VSNGVETRGG PLVEYERRIA EGELLDGDAC
101: QVGTLQELQR LYDQLIEKAE VCRLDKYASS DKASRSRWLW SRLLPQSSYA PVKGLYLYGG VGTGKTMLMD LFFNQLPGSW RKKRIHFHDF MLNVHSRLQK
201: HKGVADPLEV VAGEISDEAI LLCLDEFMVT DVADALILNR LFKQLFINGA ILVATSNRAP DNLYERGLQR DLFLPFIATL KERCVVREIG SAVDYRKLTS
301: AEQGFYFIGK DISSVIKKQF QMLVGDAQPV PQEVEVVMGR KLQVPLGANG CALFSFEELC DRPLGAADYF GLFKNFHTLA LDGVPIFGLH NKTAAYRFVT
401: LVDVMYENRA RLLCTAEGSP VELFEKIVTI SDAQQMAPRT SSRSRKNDDF DLCVDNELGF AKERTISRLT EMNSREYLEQ HAEMLAKKQQ LPLENHAEKA
501: IEV

Best Arabidopsis Sequence Match ( AT4G28070.2 )
(BLAST)

001: MRLLLLSLRR VTLFSRHQRY AFAPIHNCLI SINPSTSSSS LFSASSFCSS PHSNGDGKIA GPLVEYERRI VAGELLDGDL CQLGTLRELQ RLYDELVQSA
101: DACRLDRYSA SAKSTRSNWF WNKFVSHSSV SPVKGLYLYG GVGTGKTMLM DLFFHQLPAS WRTQRIHFHN FMLSVHSRLQ KHKGLEDPLE VVGLEIADEA
201: ILLCLDEFMV NDVADALILN RLFRHLFNNG IILVATSNRA PDNLYEGGLQ RDLFLPFIST LKERCVVREI GSSVDYRKLT SAEEGFYFIG KDISGLLKQK
301: FQLLVGDQPA GPQVVEVVMG RKLQVPLAAD GCAYFLFEEL CDRPLGAADY LGLFKKFHTL ALEGVPFFGL HNRTAAYRFV TLVDVMYENK ARLLCTAEGS
401: PLELLERIVT ISDAQQIAPR TSSRSRKSDD PDLCVDNELG FAKDRTISRL TEMNSKEYLE QHSRMLQEKQ PSS

Arabidopsis Description

AFG1-like ATPase family protein [Source:UniProtKB/TrEMBL;Acc:Q5XET7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.