Factsheet for VIT_11s0037g00990.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g01970.t01
VIT_14s0066g01280.t01
VIT_17s0000g07350.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G30490.1	VIT_01s0026g01970.t01	AT1G14340.1	21798944
AT4G30490.1	VIT_14s0066g01280.t01	AT3G27960.1	21798944
AT4G30490.1	VIT_17s0000g07350.t01	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024072.1-P	Field mustard	cytosol	61.11	78.17
AT4G28070.2	Thale cress	mitochondrion	68.65	73.15
PGSC0003DMT400029004	Potato	mitochondrion	72.22	72.37
Bra026286.1-P	Field mustard	mitochondrion	67.86	72.15
CDY19007	Canola	mitochondrion	68.06	72.06
CDX89206	Canola	mitochondrion	67.86	71.85
Solyc07g006160.2.1	Tomato	mitochondrion	70.63	70.78
GSMUA_Achr3P28020_001	Banana	mitochondrion	65.87	68.03
KRH72370	Soybean	mitochondrion	66.87	67.27
KRH02973	Soybean	mitochondrion	67.06	67.2
AT4G30490.1	Thale cress	mitochondrion	65.87	66.8
CDX72246	Canola	mitochondrion	66.07	66.73
CDY39208	Canola	mitochondrion	66.07	66.47
GSMUA_Achr1P10190_001	Banana	mitochondrion	67.06	66.02
TraesCS1A01G372400.2	Wheat	mitochondrion	63.49	63.49
Zm00001d002967_P005	Maize	mitochondrion	63.29	63.29
KXG26754	Sorghum	plastid	63.69	63.06
HORVU1Hr1G082690.6	Barley	mitochondrion	63.1	62.85
EES13629	Sorghum	plastid	63.29	62.67
Zm00001d025892_P003	Maize	mitochondrion, plastid	63.29	62.67
TraesCS1B01G392400.1	Wheat	mitochondrion	62.9	62.28
TraesCS1D01G379000.4	Wheat	mitochondrion	62.3	61.69
Os08t0265500-01	Rice	mitochondrion	16.67	46.41
VIT_04s0008g05270.t01	Wine grape	mitochondrion	25.79	21.49

Protein Annotations

EntrezGene:100260349	wikigene:100260349	Gene3D:3.40.50.300	MapMan:35.2	EMBL:AM466590	InterPro:ATPase_AFG1-like
ProteinID:CAN65875	ProteinID:CAN65875.1	ProteinID:CBI36595	ProteinID:CBI36595.3	UniProt:D7U1H9	EMBL:FN596499
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	EntrezGene:LOC100260349	wikigene:LOC100260349
InterPro:P-loop_NTPase	PFAM:PF03969	PANTHER:PTHR12169	PANTHER:PTHR12169:SF6	SUPFAM:SSF52540	UniParc:UPI0001BE47D0
ArrayExpress:VIT_11s0037g00990	EnsemblPlantsGene:VIT_11s0037g00990	EnsemblPlants:VIT_11s0037g00990.t01	unigene:Vvi.11984	RefSeq:XP_002271848	RefSeq:XP_002271848.1
RefSeq:XP_010656645.1	:	:	:	:	:

Description

No Description!

Coordinates

chr11:+:9867470..9879438

Molecular Weight (calculated)

57052.4 Da

IEP (calculated)

7.340

GRAVY (calculated)

-0.230

Length

504 amino acids

Sequence
(BLAST)

001: MRTFVLYVRQ FRSAFQHRRY SFLSDLSRRQ KVSVNWQTSG ASKPLHNAGI ARYLLPVSMV TRNLVTDSAK VANEVKEVSR AGPLVEYDRR IAEGELVDGD
101: NCQVGTLREL QRLYDDLVMS ADACSLDRYT ASEKAGRSRW LWSRFIPQSS YSPVKGLYLY GGVGTGKTML MDLFFNQLPD SWRKRRIHFH DFMLVVHSRL
201: QRHKGVADPL EVVAGEISDE AILLCLDEFM VTDVADALIL NRLFGHLFSN GCILVSTSNR APDKLYEGGL QRDLFLPFIS TLKERCIIHE IGSSIDYRKM
301: TSAEQGFFFI EKDASGLVKQ KFQHLIGEHT AVPQEVEVVM GRKLQISLGA NGCAYFPFED LCDKPLGAAD YFGLFKKFHT LALEGVPIFG LHNRTAAYRF
401: VTLVDVMYEN KARLLCTAEG SPLQLFERIV TIADAQNMAP RTSSRSRKND DFDLCVDNEL GFAKDRTISR LTEMNSKEYL EQHAAMLAEK QLSQDDGDEK
501: ALQA

Best Arabidopsis Sequence Match ( AT4G28070.2 )
(BLAST)

001: MRLLLLSLRR VTLFSRHQRY AFAPIHNCLI SINPSTSSSS LFSASSFCSS PHSNGDGKIA GPLVEYERRI VAGELLDGDL CQLGTLRELQ RLYDELVQSA
101: DACRLDRYSA SAKSTRSNWF WNKFVSHSSV SPVKGLYLYG GVGTGKTMLM DLFFHQLPAS WRTQRIHFHN FMLSVHSRLQ KHKGLEDPLE VVGLEIADEA
201: ILLCLDEFMV NDVADALILN RLFRHLFNNG IILVATSNRA PDNLYEGGLQ RDLFLPFIST LKERCVVREI GSSVDYRKLT SAEEGFYFIG KDISGLLKQK
301: FQLLVGDQPA GPQVVEVVMG RKLQVPLAAD GCAYFLFEEL CDRPLGAADY LGLFKKFHTL ALEGVPFFGL HNRTAAYRFV TLVDVMYENK ARLLCTAEGS
401: PLELLERIVT ISDAQQIAPR TSSRSRKSDD PDLCVDNELG FAKDRTISRL TEMNSKEYLE QHSRMLQEKQ PSS

Arabidopsis Description

AFG1-like ATPase family protein [Source:UniProtKB/TrEMBL;Acc:Q5XET7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.