CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES05647
EES12950
KXG33434

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G30490.1	EES12950	AT1G14340.1	21798944
AT4G30490.1	EES05647	AT3G27960.1	21798944
AT4G30490.1	KXG33434	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG26754	Sorghum	plastid	91.94	91.94
TraesCS1A01G372400.2	Wheat	mitochondrion	78.78	79.56
HORVU1Hr1G082690.6	Barley	mitochondrion	78.78	79.25
TraesCS1B01G392400.1	Wheat	mitochondrion	78.59	78.59
TraesCS1D01G379000.4	Wheat	mitochondrion	78.19	78.19
Os08t0265500-01	Rice	mitochondrion	26.33	74.03
Bra024072.1-P	Field mustard	cytosol	53.83	69.54
GSMUA_Achr3P28020_001	Banana	mitochondrion	64.64	67.42
GSMUA_Achr1P10190_001	Banana	mitochondrion	65.62	65.23
PGSC0003DMT400029004	Potato	mitochondrion	63.46	64.21
Solyc07g006160.2.1	Tomato	mitochondrion	63.06	63.82
VIT_11s0037g00990.t01	Wine grape	mitochondrion	62.67	63.29
AT4G28070.2	Thale cress	mitochondrion	58.15	62.58
Bra026286.1-P	Field mustard	mitochondrion	56.97	61.18
CDY19007	Canola	mitochondrion	57.17	61.13
CDX89206	Canola	mitochondrion	57.17	61.13
KRH02973	Soybean	mitochondrion	60.12	60.84
KRH72370	Soybean	mitochondrion	59.73	60.68
AT4G30490.1	Thale cress	mitochondrion	58.15	59.56
CDX72246	Canola	mitochondrion	58.35	59.52
CDY39208	Canola	mitochondrion	58.55	59.48
EER90502	Sorghum	mitochondrion	27.5	22.69

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.2	EntrezGene:8073279	InterPro:ATPase_AFG1-like	UniProt:C5YJV6	ncoils:Coil
EnsemblPlants:EES13629	ProteinID:EES13629	ProteinID:EES13629.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	InterPro:P-loop_NTPase	PFAM:PF03969	PANTHER:PTHR12169	PANTHER:PTHR12169:SF6	EnsemblPlantsGene:SORBI_3007G095200
SUPFAM:SSF52540	unigene:Sbi.5459	UniParc:UPI0001A87CA6	RefSeq:XP_002444134.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr7:+:17638774..17644355

Molecular Weight (calculated)

57687.2 Da

IEP (calculated)

7.766

GRAVY (calculated)

-0.335

Length

509 amino acids

Sequence
(BLAST)

001: MRSVVRSLRQ RHRFTQHHAE RQSPATRLIR QQNALIMCSS TTRSLSMLCR NSETSRFASP AVELMKSMFS TIAADSIKDI RGGGPMVEYD RRIASGELVD
101: GDSFQVDTIQ QLQRLYKELI ENEEDCKLDR YKSSEKSGRS RWLWSRLITQ PSTYAPVKGL YLYGGVGTGK TMLMDLFYEQ LPSNWRKKRI HFHDFMLNVH
201: SHLQMHKGVS DPLDVVAAEI SDEAIILCLD EFMVTDVADA MILNRLFRQL FSKGVILVST SNRAPDKLYE GGLQRDLFLP FIDTLKERCI AHPIGSAVDY
301: RQMGSAEQGF YFVGKHYNTL LKQRLQSLIG DDEPSPQTVE VIMGRKLPVP LGANGCAYFP FEDLCDKPLG AADYFGLFKK FHTLALDGVP KFGSSNRTSA
401: YRFVTLIDVM YENKARLLCT AEAGPIDLFE NIVTVAEAQK VSPRSSRSQK SDNPDLCVDN ELGFAKDRTI SRLTEINSRE YLEDFEMRLR QQQQLSLQGL
501: DNGGHVVLA

Best Arabidopsis Sequence Match ( AT4G30490.1 )
(BLAST)

001: MRPIIRLSSL SRIRWALRNN QERYSSTFYS KSRKLLIGVN QNQALLNTNT DNSSLYSRSS IFRGLSAEAV EAADPATTRV TVSDVNRTGP LVEYERRISN
101: GELMTGDICQ ISALRELQRL YDELVDSVDT CRLDRYNTSD KSSRSRWFWS RLMPQTSYSP VKGLYLYGGV GTGKTMLMDL FFDQLPCTWK KQRIHFHDFM
201: LSVHSRLQKH KGLSDPLEVV AQEIAHDAIL LCLDEFMVTD VADALILNRL FGHLFSNGVI LVATSNRNPD KLYEGGLQRD LFLPFISSLK ERSVVHEIGS
301: AVDYRKLTSA EQGFYFIGKD LSTLLKQKFR QLIGDNVVAR PQVVEVVMGR KLQIPLGANG CAYFPFEELC DRPLGAADYF GLFKKFHTLA LDEIPVFGLH
401: NRTAAYRFVT LVDVMYENRA RLLCTAEANP QELLEKIITI SEAKSMGPRT SSRSRKNDVT ELCVDNELGF AKDRTISRLT EMNSKEYLEH HAITHNL

Arabidopsis Description

AFG1-like ATPase family protein [Source:UniProtKB/TrEMBL;Acc:Q8L517]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.