Factsheet for Solyc07g006160.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g086840.2.1
Solyc03g115070.1.1
Solyc05g007200.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G30490.1	Solyc05g007200.2.1	AT1G14340.1	21798944
AT4G30490.1	Solyc02g086840.2.1	AT3G27960.1	21798944
AT4G30490.1	Solyc03g115070.1.1	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029004	Potato	mitochondrion	96.62	96.62
Bra024072.1-P	Field mustard	cytosol	61.23	78.17
AT4G28070.2	Thale cress	mitochondrion	66.6	70.82
VIT_11s0037g00990.t01	Wine grape	mitochondrion	70.78	70.63
Bra026286.1-P	Field mustard	mitochondrion	66.0	70.04
CDX89206	Canola	mitochondrion	66.2	69.96
CDY19007	Canola	mitochondrion	66.0	69.75
KRH02973	Soybean	mitochondrion	66.2	66.2
CDY39208	Canola	mitochondrion	65.81	66.07
KRH72370	Soybean	mitochondrion	65.81	66.07
CDX72246	Canola	mitochondrion	65.21	65.73
GSMUA_Achr3P28020_001	Banana	mitochondrion	63.62	65.57
AT4G30490.1	Thale cress	mitochondrion	64.61	65.39
KXG26754	Sorghum	plastid	66.0	65.23
Zm00001d002967_P005	Maize	mitochondrion	65.21	65.08
Zm00001d025892_P003	Maize	mitochondrion, plastid	65.81	65.03
GSMUA_Achr1P10190_001	Banana	mitochondrion	66.0	64.84
TraesCS1A01G372400.2	Wheat	mitochondrion	63.82	63.69
EES13629	Sorghum	plastid	63.82	63.06
TraesCS1B01G392400.1	Wheat	mitochondrion	62.62	61.89
HORVU1Hr1G082690.6	Barley	mitochondrion	62.23	61.86
TraesCS1D01G379000.4	Wheat	mitochondrion	62.23	61.49
Os08t0265500-01	Rice	mitochondrion	15.9	44.2
Solyc06g066090.2.1	Tomato	mitochondrion	27.04	22.9

Protein Annotations

EnsemblPlants:Solyc07g006160.2.1	EnsemblPlantsGene:Solyc07g006160.2	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	InterPro:ATPase_AFG1-like	InterPro:P-loop_NTPase	ncoils:Coil	PANTHER:PTHR12169	PANTHER:PTHR12169:SF6
PFAM:PF03969	SUPFAM:SSF52540	UniParc:UPI000276C3B1	UniProt:K4CB87	MapMan:35.2	:

Description

No Description!

Coordinates

chr7:+:998031..1003161

Molecular Weight (calculated)

56843.7 Da

IEP (calculated)

8.241

GRAVY (calculated)

-0.221

Length

503 amino acids

Sequence
(BLAST)

001: MRKVLQSARQ IKSALRYRKD NVINSLVKRQ YFSTNISHGC ICKLSYNGGI TRHSQPYYML SRAMFAGVAT VSNGVETRGG PLVEYERRIA EGDLLDGDAC
101: QVGTLQELQR LYDQLIEKAE VCRLDKYASS DKASRSRWLW SRLLPQSSYA PVKGLYLYGG VGTGKTMLMD LFFDQLPGNW RKKRIHFHDF MLNVHSRLQK
201: HKGVPDPLEV VAGEISDEAI LLCLDEFMVT DVADALILNR LFKQLFMNGA ILVATSNRAP DNLYERGLQR DLFLPFIATL KERCVVREIG SAVDYRKLTS
301: AEQGFYFIGK DISSVIKKQF QMLVGDAQPV PQEVEVVMGR KLQVPLGANG CALFSFEELC DRPLGAADYF GLFKNFHTLA LDGVPIFGLH NKTAAYRFVT
401: LVDVMYENRA RLLCTAEGSP VELFEKIVTI SDAQQIAPRT SSRSRKNDDF DLCVDNELGF AKDRTISRLT EMNSREYLEQ HAEMLAKKLQ LPSENHGEKA
501: IEV

Best Arabidopsis Sequence Match ( AT4G28070.2 )
(BLAST)

001: MRLLLLSLRR VTLFSRHQRY AFAPIHNCLI SINPSTSSSS LFSASSFCSS PHSNGDGKIA GPLVEYERRI VAGELLDGDL CQLGTLRELQ RLYDELVQSA
101: DACRLDRYSA SAKSTRSNWF WNKFVSHSSV SPVKGLYLYG GVGTGKTMLM DLFFHQLPAS WRTQRIHFHN FMLSVHSRLQ KHKGLEDPLE VVGLEIADEA
201: ILLCLDEFMV NDVADALILN RLFRHLFNNG IILVATSNRA PDNLYEGGLQ RDLFLPFIST LKERCVVREI GSSVDYRKLT SAEEGFYFIG KDISGLLKQK
301: FQLLVGDQPA GPQVVEVVMG RKLQVPLAAD GCAYFLFEEL CDRPLGAADY LGLFKKFHTL ALEGVPFFGL HNRTAAYRFV TLVDVMYENK ARLLCTAEGS
401: PLELLERIVT ISDAQQIAPR TSSRSRKSDD PDLCVDNELG FAKDRTISRL TEMNSKEYLE QHSRMLQEKQ PSS

Arabidopsis Description

AFG1-like ATPase family protein [Source:UniProtKB/TrEMBL;Acc:Q5XET7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.