CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93305
KRH54704
KRH56614
KRH63230
KRH69305

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G30490.1	KRH69305	AT1G14340.1	21798944
AT4G30490.1	KRG93305	AT3G27960.1	21798944
AT4G30490.1	KRH56614	AT3G27960.1	21798944
AT4G30490.1	KRH54704	AT5G61010.1	21798944
AT4G30490.1	KRH63230	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02973	Soybean	mitochondrion	92.81	92.45
Bra024072.1-P	Field mustard	cytosol	60.68	77.16
Bra026286.1-P	Field mustard	mitochondrion	64.67	68.35
CDX89206	Canola	mitochondrion	64.47	67.86
CDY19007	Canola	mitochondrion	64.47	67.86
AT4G28070.2	Thale cress	mitochondrion	63.87	67.65
VIT_11s0037g00990.t01	Wine grape	mitochondrion	67.27	66.87
Solyc07g006160.2.1	Tomato	mitochondrion	66.07	65.81
PGSC0003DMT400029004	Potato	mitochondrion	66.07	65.81
AT4G30490.1	Thale cress	mitochondrion	65.27	65.79
CDY39208	Canola	mitochondrion	65.47	65.47
CDX72246	Canola	mitochondrion	65.07	65.33
GSMUA_Achr3P28020_001	Banana	mitochondrion	60.68	62.3
GSMUA_Achr1P10190_001	Banana	mitochondrion	62.87	61.52
TraesCS1A01G372400.2	Wheat	mitochondrion	61.48	61.11
Zm00001d002967_P005	Maize	mitochondrion	61.28	60.91
Zm00001d025892_P003	Maize	mitochondrion, plastid	61.68	60.71
KXG26754	Sorghum	plastid	61.48	60.51
EES13629	Sorghum	plastid	60.68	59.73
HORVU1Hr1G082690.6	Barley	mitochondrion	60.08	59.49
TraesCS1B01G392400.1	Wheat	mitochondrion	60.28	59.33
TraesCS1D01G379000.4	Wheat	mitochondrion	60.28	59.33
Os08t0265500-01	Rice	mitochondrion	16.17	44.75
KRH05135	Soybean	mitochondrion	26.95	22.77

Protein Annotations

EMBL:ACUP02001203	EnsemblPlants:KRH72370	EnsemblPlantsGene:GLYMA_02G207800	EntrezGene:100798266	Gene3D:3.40.50.300	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:ATPase_AFG1-like	InterPro:P-loop_NTPase	PANTHER:PTHR12169
PANTHER:PTHR12169:SF6	PFAM:PF03969	ProteinID:KRH72370	ProteinID:KRH72370.1	ProteinID:KRH72371.1	ProteinID:KRH72372.1
ProteinID:KRH72373.1	SUPFAM:SSF52540	UniParc:UPI0002337321	UniProt:K7K9T8	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr2:+:39260119..39266476

Molecular Weight (calculated)

56389.5 Da

IEP (calculated)

6.727

GRAVY (calculated)

-0.285

Length

501 amino acids

Sequence
(BLAST)

001: MRNVLRSLRH LRPAFQRQDC VLISVNVAEE PPCHIGKSCH IHSSAFRVVD HAETNFKNHL FTTTTKPLSN DAAKLTNRET SKAGPLVEYE RRIDNGELVE
101: GDACQVDTLT ELQRLYDELV ESADTCQLDR NSEKPVRSGW LWSRLLSHPS YSPVKGLYLY GGVGTGKTML MDLFFDQLPS NWRKKRIHFH DFMLNVHSML
201: QKHKGLSDPL DVVAGEISDD AILLCLDEFM VTDVADALVL NRLFRHLFNK GIILVATSNR APDNLYEGGL QRDLFLPFIA ALKERCVVHE IGSSVDYRKM
301: ASGEQGFYLV GTDLSGFLKQ KFQQLIGEGT ATPQEVEVVM GRTLHVPLGA NGCAYFPFEE LCERPVGAAD YFGLFRKFHT LALDGIPIFG LHNKSAAHRF
401: VTLVDVMYEN KARLLCTAEG SPQDLFEKIL TISEAKNMAP RTSSRSRKND DSNLCVDNEL GFAKDRTISR LTEINSKEYL QHHAAMLAEK KERVDQNAVE
501: A

Best Arabidopsis Sequence Match ( AT4G30490.1 )
(BLAST)

001: MRPIIRLSSL SRIRWALRNN QERYSSTFYS KSRKLLIGVN QNQALLNTNT DNSSLYSRSS IFRGLSAEAV EAADPATTRV TVSDVNRTGP LVEYERRISN
101: GELMTGDICQ ISALRELQRL YDELVDSVDT CRLDRYNTSD KSSRSRWFWS RLMPQTSYSP VKGLYLYGGV GTGKTMLMDL FFDQLPCTWK KQRIHFHDFM
201: LSVHSRLQKH KGLSDPLEVV AQEIAHDAIL LCLDEFMVTD VADALILNRL FGHLFSNGVI LVATSNRNPD KLYEGGLQRD LFLPFISSLK ERSVVHEIGS
301: AVDYRKLTSA EQGFYFIGKD LSTLLKQKFR QLIGDNVVAR PQVVEVVMGR KLQIPLGANG CAYFPFEELC DRPLGAADYF GLFKKFHTLA LDEIPVFGLH
401: NRTAAYRFVT LVDVMYENRA RLLCTAEANP QELLEKIITI SEAKSMGPRT SSRSRKNDVT ELCVDNELGF AKDRTISRLT EMNSKEYLEH HAITHNL

Arabidopsis Description

AFG1-like ATPase family protein [Source:UniProtKB/TrEMBL;Acc:Q8L517]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.