CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0008g05270.t01	Wine grape	mitochondrion	70.99	69.59
Solyc06g066090.2.1	Tomato	mitochondrion	67.79	67.68
PGSC0003DMT400052752	Potato	cytosol	51.6	65.95
GSMUA_AchrUn_...	Banana	cytosol	24.79	65.33
CDX76756	Canola	mitochondrion	61.72	62.67
Bra007794.1-P	Field mustard	mitochondrion	61.38	62.33
CDY11525	Canola	mitochondrion	61.05	61.99
GSMUA_AchrUn_...	Banana	nucleus	15.85	56.97
EER90502	Sorghum	mitochondrion	59.19	56.89
TraesCS3D01G053700.1	Wheat	mitochondrion	58.01	56.58
TraesCS3A01G054200.1	Wheat	mitochondrion	57.67	56.44
Os03t0851900-01	Rice	plasma membrane	58.18	56.28
AT2G25530.1	Thale cress	cytosol, nucleus, vacuole	61.89	56.03
HORVU3Hr1G010290.1	Barley	cytosol, mitochondrion	57.84	54.53
GSMUA_AchrUn_...	Banana	plastid	17.71	44.49
Zm00001d034868_P002	Maize	plastid	27.66	40.49
KRH02973	Soybean	mitochondrion	22.93	27.04
KRH72370	Soybean	mitochondrion	22.77	26.95

Protein Annotations

EMBL:ACUP02010680	EnsemblPlants:KRH05135	EnsemblPlantsGene:GLYMA_17G209600	EntrezGene:100816565	Gene3D:3.40.50.300	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:ATPase_AFG1-like	InterPro:P-loop_NTPase	ncoils:Coil
PANTHER:PTHR12169	PANTHER:PTHR12169:SF5	PFAM:PF03969	ProteinID:KRH05135	ProteinID:KRH05135.1	SEG:seg
SUPFAM:SSF52540	UniParc:UPI0002960F9E	UniProt:K7MN10	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr17:-:34571869..34581634

Molecular Weight (calculated)

68776.6 Da

IEP (calculated)

8.367

GRAVY (calculated)

-0.503

Length

593 amino acids

Sequence
(BLAST)

001: MRRISNLLSK SKQLAAFASL ETKLRANALR SYCDQSHLRR QNRPGPLVQY RSLVDQGKLR HDPFQESVAS ELENLLARLE QYEKDMEEYH VNLANWEKQR
101: ENERRRLLME EVELHQKDEY WWKRLNNKLT ERWESRKRPK NMESGVGKWV SYLKREKKLD SLVGHRPTAP PAPKGLYIYG NVGSGKTMLM DMFYSATKGI
201: VKHRRRYHFH EAMLRINEQM HKIWKNQIEE KPLQSTIAGW IMSLPFDTKA KEWLAAEERY KQEVQMKNIL PAVADMFFLD GEENEKGASI LCFDEIQTVD
301: VFAIVALSGI LSRLLSSGTI IVATSNRAPK DLNEAGMQKE IFQKLVSKLE EHCEKVLIGS EIDYRRFIAQ KSENQVHYFW PIEKEAMNEF EKKWHDVTGR
401: FGGRIISNTI SVMFGRTLEV PQSFDGVARF TFEYLCGRPL GAADYIAVAE NFHTVFISDI PVMSMRIRDK ARRFITLIDE LYNHHCCLCC LASSSIDELF
501: QGTEEGTLFD LESFQFETET EGGRLRRNVL AEGRVSSGGA PSGITSILSG QEEIFAFQRA VSRLIEMQTP LYLDGVSNFH PYFQRQHKKL QQL

Best Arabidopsis Sequence Match ( AT2G25530.1 )
(BLAST)

001: MSRTGPHRVW QIWHPSFDIS TKPTKEIYTD TNKPNQQYDK RSIFHHLNRD RKASLQRRNH NRSLKQQIMP NVSQISTVLR LAFSCKRRLS NGLHFVARSY
101: STSDPPKQPS GPLTNYSKLV EQGRLQHDPY QEKVVSAFEN LFGRLEHFEK QMEDYHVRLA EWEKKREEER RKLMVEEAEK KEDDGMWASV NKQGQKLLGR
201: WVLGRRQMNV EPGVGKWVSY LNRERKLDSI VGSRPAVPPA PKGLYIYGNV GCGKTMLMDM FYGATDGIIR HRQRFHFHEA MLKINEQMHK YWKENGAEKP
301: MQYSISSWIM NLPVDEKVKE WLAGEEFYKQ QLQMKHILPA VADKFLVDQQ SSKKGASILC FDEIQTVDVF AIVALSGIMS RLLTTGTVLV ATSNRAPREL
401: NQDGMQKEIF DKFISKLEKH CEIISIGSEV DYRRVAAKNS AENVHYLWPL NDAVLEEFEK MWRQVTDQYG GEITSATLPV MFGRTVEVPE SCSGVARFTF
501: EYLCGRPVGA ADYIAVAKNY HTIFISDIPA MSMEIRDKAR RFITLVDELY NHHCCLVSSA ETAIDELFQG TAEGTLFDLE SFQFETETED SRLRRDVLAE
601: GSISAAGSPS SIVSMLSGEE EMFAFARAAS RLIEMQTPLY LEGVRFLHPY FHQQK

Arabidopsis Description

AFG1-like ATPase family protein [Source:UniProtKB/TrEMBL;Acc:Q9SKJ6]
SUBAcon: [vacuole,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.