Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d034868_P002 | Maize | plastid | 60.44 | 33.58 |
| PGSC0003DMT400052752 | Potato | cytosol | 57.78 | 28.02 |
| VIT_04s0008g05270.t01 | Wine grape | mitochondrion | 68.89 | 25.62 |
| KRH05135 | Soybean | mitochondrion | 65.33 | 24.79 |
| Solyc06g066090.2.1 | Tomato | mitochondrion | 64.44 | 24.41 |
| Os03t0851900-01 | Rice | plasma membrane | 65.33 | 23.98 |
| EER90502 | Sorghum | mitochondrion | 64.0 | 23.34 |
| CDX76756 | Canola | mitochondrion | 59.56 | 22.95 |
| Bra007794.1-P | Field mustard | mitochondrion | 58.67 | 22.6 |
| CDY11525 | Canola | mitochondrion | 58.67 | 22.6 |
| TraesCS3A01G054200.1 | Wheat | mitochondrion | 60.0 | 22.28 |
| TraesCS3D01G053700.1 | Wheat | mitochondrion | 59.56 | 22.04 |
| HORVU3Hr1G010290.1 | Barley | cytosol, mitochondrion | 60.0 | 21.46 |
| AT2G25530.1 | Thale cress | cytosol, nucleus, vacuole | 60.44 | 20.76 |
| GSMUA_Achr1P10190_001 | Banana | mitochondrion | 22.67 | 9.96 |
| GSMUA_Achr3P28020_001 | Banana | mitochondrion | 21.33 | 9.84 |
| GSMUA_AchrUn_... | Banana | nucleus | 0.0 | 0.0 |
| GSMUA_AchrUn_... | Banana | plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP06980_001 | EnsemblPlants:GSMUA_AchrUn_randomT06980_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG06980_001 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005524 | InterPro:ATPase_AFG1-like | PANTHER:PTHR12169 | PANTHER:PTHR12169:SF5 | PFAM:PF03969 | UniParc:UPI000296B8C8 |
| UniProt:M0U709 | MapMan:35.2 | : | : | : | : |
Description
Putative Lactation elevated protein 1 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG06980_001]
Coordinates
chrchrUn_random:+:30545750..30549259
Molecular Weight (calculated)
25162.1 Da
IEP (calculated)
6.408
GRAVY (calculated)
-0.095
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MWCEVTRKAG GAITSTVIPV MFGRCLEVPE SCNGIARFNF EYICGRPVGA SDYIAVARHY HTVFVSDIPV MSMRIRDKAR RFITLIDELY NHHCCIFCLA
101: ACSIDDLFQG TDEGTLFDLE SFQFETETEG GKLRRDVLAA GSVGLGPAPS GITSLLSGQE EMFAFRRAVS RLIEMQTPSY RDGVQLFHPL FQQHNRQLTD
201: HAPVSQLQPS LLSEQHKPTS HTLCN
101: ACSIDDLFQG TDEGTLFDLE SFQFETETEG GKLRRDVLAA GSVGLGPAPS GITSLLSGQE EMFAFRRAVS RLIEMQTPSY RDGVQLFHPL FQQHNRQLTD
201: HAPVSQLQPS LLSEQHKPTS HTLCN
001: MSRTGPHRVW QIWHPSFDIS TKPTKEIYTD TNKPNQQYDK RSIFHHLNRD RKASLQRRNH NRSLKQQIMP NVSQISTVLR LAFSCKRRLS NGLHFVARSY
101: STSDPPKQPS GPLTNYSKLV EQGRLQHDPY QEKVVSAFEN LFGRLEHFEK QMEDYHVRLA EWEKKREEER RKLMVEEAEK KEDDGMWASV NKQGQKLLGR
201: WVLGRRQMNV EPGVGKWVSY LNRERKLDSI VGSRPAVPPA PKGLYIYGNV GCGKTMLMDM FYGATDGIIR HRQRFHFHEA MLKINEQMHK YWKENGAEKP
301: MQYSISSWIM NLPVDEKVKE WLAGEEFYKQ QLQMKHILPA VADKFLVDQQ SSKKGASILC FDEIQTVDVF AIVALSGIMS RLLTTGTVLV ATSNRAPREL
401: NQDGMQKEIF DKFISKLEKH CEIISIGSEV DYRRVAAKNS AENVHYLWPL NDAVLEEFEK MWRQVTDQYG GEITSATLPV MFGRTVEVPE SCSGVARFTF
501: EYLCGRPVGA ADYIAVAKNY HTIFISDIPA MSMEIRDKAR RFITLVDELY NHHCCLVSSA ETAIDELFQG TAEGTLFDLE SFQFETETED SRLRRDVLAE
601: GSISAAGSPS SIVSMLSGEE EMFAFARAAS RLIEMQTPLY LEGVRFLHPY FHQQK
101: STSDPPKQPS GPLTNYSKLV EQGRLQHDPY QEKVVSAFEN LFGRLEHFEK QMEDYHVRLA EWEKKREEER RKLMVEEAEK KEDDGMWASV NKQGQKLLGR
201: WVLGRRQMNV EPGVGKWVSY LNRERKLDSI VGSRPAVPPA PKGLYIYGNV GCGKTMLMDM FYGATDGIIR HRQRFHFHEA MLKINEQMHK YWKENGAEKP
301: MQYSISSWIM NLPVDEKVKE WLAGEEFYKQ QLQMKHILPA VADKFLVDQQ SSKKGASILC FDEIQTVDVF AIVALSGIMS RLLTTGTVLV ATSNRAPREL
401: NQDGMQKEIF DKFISKLEKH CEIISIGSEV DYRRVAAKNS AENVHYLWPL NDAVLEEFEK MWRQVTDQYG GEITSATLPV MFGRTVEVPE SCSGVARFTF
501: EYLCGRPVGA ADYIAVAKNY HTIFISDIPA MSMEIRDKAR RFITLVDELY NHHCCLVSSA ETAIDELFQG TAEGTLFDLE SFQFETETED SRLRRDVLAE
601: GSISAAGSPS SIVSMLSGEE EMFAFARAAS RLIEMQTPLY LEGVRFLHPY FHQQK
Arabidopsis Description
AFG1-like ATPase family protein [Source:UniProtKB/TrEMBL;Acc:Q9SKJ6]
SUBAcon: [vacuole,nucleus,cytosol]
SUBAcon: [vacuole,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.