Factsheet for GSMUA_Achr1P10190_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P09630_001
GSMUA_Achr3P19960_001
GSMUA_Achr4P23470_001
GSMUA_Achr7P00520_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G30490.1	GSMUA_Achr3P19960_001	AT1G14340.1	21798944
AT4G30490.1	GSMUA_Achr10P...	AT3G27960.1	21798944
AT4G30490.1	GSMUA_Achr2P09630_001	AT3G27960.1	21798944
AT4G30490.1	GSMUA_Achr4P23470_001	AT5G61010.1	21798944
AT4G30490.1	GSMUA_Achr7P00520_001	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024072.1-P	Field mustard	cytosol	57.03	74.11
GSMUA_Achr3P28020_001	Banana	mitochondrion	68.55	71.93
Bra026286.1-P	Field mustard	mitochondrion	63.28	68.35
CDX89206	Canola	mitochondrion	63.28	68.07
CDY19007	Canola	mitochondrion	63.28	68.07
AT4G28070.2	Thale cress	mitochondrion	62.7	67.86
VIT_11s0037g00990.t01	Wine grape	mitochondrion	66.02	67.06
Zm00001d002967_P005	Maize	mitochondrion	65.82	66.87
Zm00001d025892_P003	Maize	mitochondrion, plastid	66.21	66.6
KXG26754	Sorghum	plastid	66.21	66.6
TraesCS1A01G372400.2	Wheat	mitochondrion	65.43	66.47
TraesCS1D01G379000.4	Wheat	mitochondrion	65.82	66.21
Solyc07g006160.2.1	Tomato	mitochondrion	64.84	66.0
HORVU1Hr1G082690.6	Barley	mitochondrion	65.04	65.81
TraesCS1B01G392400.1	Wheat	mitochondrion	65.23	65.62
EES13629	Sorghum	plastid	65.23	65.62
PGSC0003DMT400029004	Potato	mitochondrion	64.06	65.21
KRH02973	Soybean	mitochondrion	61.91	63.02
KRH72370	Soybean	mitochondrion	61.52	62.87
CDY39208	Canola	mitochondrion	60.74	62.08
AT4G30490.1	Thale cress	mitochondrion	59.96	61.77
CDX72246	Canola	mitochondrion	60.16	61.72
Os08t0265500-01	Rice	mitochondrion	18.55	52.49
GSMUA_AchrUn_...	Banana	cytosol	9.96	22.67
GSMUA_AchrUn_...	Banana	nucleus	7.03	21.82
GSMUA_AchrUn_...	Banana	plastid	6.84	14.83

Protein Annotations

EnsemblPlants:GSMUA_Achr1P10190_001	EnsemblPlants:GSMUA_Achr1T10190_001	EnsemblPlantsGene:GSMUA_Achr1G10190_001	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:ATPase_AFG1-like	InterPro:P-loop_NTPase	ncoils:Coil	PANTHER:PTHR12169
PANTHER:PTHR12169:SF6	PFAM:PF03969	SUPFAM:SSF52540	UniParc:UPI00029625C2	UniProt:M0RYM8	MapMan:35.2

Description

Putative Lactation elevated protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr1G10190_001]

Coordinates

chr1:-:7693581..7699481

Molecular Weight (calculated)

57484.5 Da

IEP (calculated)

7.092

GRAVY (calculated)

-0.283

Length

512 amino acids

Sequence
(BLAST)

001: MRSFARALRQ VRAPSGVHRG ALSHTGLGKD GKVLILGNSV ADYSRNAFHG REIGRYLNQS TVLSRSLSTP AANDSEVSNY AGGAGPLSEY ERRIASGELV
101: DGDDFQVDTI QELQRLYREL AELEESCQLD RYTASKKSQR SRWLWSRLIP QSSYSPVKGL YLYGGVGTGK TMLMDLFFDQ LPSNWRKKRI HFHDFMLNVH
201: SRLQMHKGVS DPLEVVAGEI SDESILLCVD EFMVTDVADA LILNRLFRHL FSEGIVLVST SNRAPDQLYE GGLQRDLFLP FIETLKAMEW IYLCVVHAIG
301: SSTDYRKIGS AEKGFYFIGK GHTGFLKQKF QHLIGHDKPG QQVVEVVMGR KLQVPFGANG CAYFPFEELC DRPLGAADYF GLFKNFHTLT LDGVPRFGIH
401: NRTAAYRFVT LVDVMYENKA RLLCTAEASP VELFESIVTV ADAQKISPRT SSRSQKKDDV DLCVDNELGF AKDRTISRLT EMNSREYLEQ HEARLQEKAS
501: GEAHLNGVVV EA

Best Arabidopsis Sequence Match ( AT4G28070.2 )
(BLAST)

001: MRLLLLSLRR VTLFSRHQRY AFAPIHNCLI SINPSTSSSS LFSASSFCSS PHSNGDGKIA GPLVEYERRI VAGELLDGDL CQLGTLRELQ RLYDELVQSA
101: DACRLDRYSA SAKSTRSNWF WNKFVSHSSV SPVKGLYLYG GVGTGKTMLM DLFFHQLPAS WRTQRIHFHN FMLSVHSRLQ KHKGLEDPLE VVGLEIADEA
201: ILLCLDEFMV NDVADALILN RLFRHLFNNG IILVATSNRA PDNLYEGGLQ RDLFLPFIST LKERCVVREI GSSVDYRKLT SAEEGFYFIG KDISGLLKQK
301: FQLLVGDQPA GPQVVEVVMG RKLQVPLAAD GCAYFLFEEL CDRPLGAADY LGLFKKFHTL ALEGVPFFGL HNRTAAYRFV TLVDVMYENK ARLLCTAEGS
401: PLELLERIVT ISDAQQIAPR TSSRSRKSDD PDLCVDNELG FAKDRTISRL TEMNSKEYLE QHSRMLQEKQ PSS

Arabidopsis Description

AFG1-like ATPase family protein [Source:UniProtKB/TrEMBL;Acc:Q5XET7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.