CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES05647
EES12950
KXG33434

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G30490.1	EES12950	AT1G14340.1	21798944
AT4G30490.1	EES05647	AT3G27960.1	21798944
AT4G30490.1	KXG33434	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002967_P005	Maize	mitochondrion	93.71	94.64
EES13629	Sorghum	plastid	91.94	91.94
TraesCS1A01G372400.2	Wheat	mitochondrion	80.55	81.35
HORVU1Hr1G082690.6	Barley	mitochondrion	79.96	80.43
TraesCS1D01G379000.4	Wheat	mitochondrion	80.16	80.16
TraesCS1B01G392400.1	Wheat	mitochondrion	79.96	79.96
Os08t0265500-01	Rice	mitochondrion	27.11	76.24
Bra024072.1-P	Field mustard	cytosol	55.21	71.32
GSMUA_Achr3P28020_001	Banana	mitochondrion	66.01	68.85
GSMUA_Achr1P10190_001	Banana	mitochondrion	66.6	66.21
PGSC0003DMT400029004	Potato	mitochondrion	65.23	66.0
Solyc07g006160.2.1	Tomato	mitochondrion	65.23	66.0
VIT_11s0037g00990.t01	Wine grape	mitochondrion	63.06	63.69
AT4G28070.2	Thale cress	mitochondrion	58.94	63.42
Bra026286.1-P	Field mustard	mitochondrion	58.55	62.87
CDY19007	Canola	mitochondrion	58.74	62.82
CDX89206	Canola	mitochondrion	58.74	62.82
KRH02973	Soybean	mitochondrion	61.3	62.03
CDX72246	Canola	mitochondrion	60.31	61.52
KRH72370	Soybean	mitochondrion	60.51	61.48
AT4G30490.1	Thale cress	mitochondrion	59.73	61.17
CDY39208	Canola	mitochondrion	60.12	61.08
EER90502	Sorghum	mitochondrion	27.5	22.69

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.2	UniProt:A0A1B6PM60	InterPro:ATPase_AFG1-like	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	EnsemblPlants:KXG26754	ProteinID:KXG26754	ProteinID:KXG26754.1
InterPro:P-loop_NTPase	PFAM:PF03969	PANTHER:PTHR12169	PANTHER:PTHR12169:SF6	EnsemblPlantsGene:SORBI_3006G153400	SUPFAM:SSF52540
UniParc:UPI0001C80541	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:51357058..51363410

Molecular Weight (calculated)

57707.3 Da

IEP (calculated)

7.081

GRAVY (calculated)

-0.306

Length

509 amino acids

Sequence
(BLAST)

001: MRSVVRSLRQ LRRFAQHHAE RHSQATRLFG QQNALIMCGL TSRSLSMLRR NGEISRFASP GMELMRSMFS TVAADSIKDI GRGGPMVEYE RRIASGDLVD
101: GDSFQVDTIH QLQRLYEELI ENEEDCQLDR YKSSEKSGRS RWLWSRLITQ PSTYAPVKGL YLYGGVGTGK TMLMDLFYEQ LPSNWRKKRI HFHDFMLNVH
201: SRLQMHKGVS DPLDVVAAEI SDEAIILCLD EFMVTDVADA MILNRLFRQL FSKGVILVST SNRPPDKLYE GGLQRDLFLP FIDTLKERCI VHPIGSAVDY
301: RQLGSAEQGF YFVGKHYSTL LKQKLQSLIG DEEPSPQTVE VIMGRKLQVS LGANGCAYFP FEDLCDRPLG AADYFGLFKK FHTLALDGVP KFGSSNRTAA
401: YRFVTLIDVM YENKARLLCT AEAGPVGLFE NIVTVAEAQK VSPRYSRSQK SDDPDLCVDN ELGFAKDRTI SRLTEINSRE YLEDFEMRLR QQQQLPLQGL
501: DNGGDVVLA

Best Arabidopsis Sequence Match ( AT4G30490.1 )
(BLAST)

001: MRPIIRLSSL SRIRWALRNN QERYSSTFYS KSRKLLIGVN QNQALLNTNT DNSSLYSRSS IFRGLSAEAV EAADPATTRV TVSDVNRTGP LVEYERRISN
101: GELMTGDICQ ISALRELQRL YDELVDSVDT CRLDRYNTSD KSSRSRWFWS RLMPQTSYSP VKGLYLYGGV GTGKTMLMDL FFDQLPCTWK KQRIHFHDFM
201: LSVHSRLQKH KGLSDPLEVV AQEIAHDAIL LCLDEFMVTD VADALILNRL FGHLFSNGVI LVATSNRNPD KLYEGGLQRD LFLPFISSLK ERSVVHEIGS
301: AVDYRKLTSA EQGFYFIGKD LSTLLKQKFR QLIGDNVVAR PQVVEVVMGR KLQIPLGANG CAYFPFEELC DRPLGAADYF GLFKKFHTLA LDEIPVFGLH
401: NRTAAYRFVT LVDVMYENRA RLLCTAEANP QELLEKIITI SEAKSMGPRT SSRSRKNDVT ELCVDNELGF AKDRTISRLT EMNSKEYLEH HAITHNL

Arabidopsis Description

AFG1-like ATPase family protein [Source:UniProtKB/TrEMBL;Acc:Q8L517]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.