Factsheet for GSMUA_Achr3P28020_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P09630_001
GSMUA_Achr3P19960_001
GSMUA_Achr4P23470_001
GSMUA_Achr7P00520_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G30490.1	GSMUA_Achr3P19960_001	AT1G14340.1	21798944
AT4G30490.1	GSMUA_Achr10P...	AT3G27960.1	21798944
AT4G30490.1	GSMUA_Achr2P09630_001	AT3G27960.1	21798944
AT4G30490.1	GSMUA_Achr4P23470_001	AT5G61010.1	21798944
AT4G30490.1	GSMUA_Achr7P00520_001	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024072.1-P	Field mustard	cytosol	60.04	74.37
GSMUA_Achr1P10190_001	Banana	mitochondrion	71.93	68.55
TraesCS1A01G372400.2	Wheat	mitochondrion	69.26	67.06
AT4G28070.2	Thale cress	mitochondrion	64.96	67.02
Zm00001d002967_P005	Maize	mitochondrion	69.06	66.87
Bra026286.1-P	Field mustard	mitochondrion	64.55	66.46
KXG26754	Sorghum	plastid	68.85	66.01
HORVU1Hr1G082690.6	Barley	mitochondrion	68.44	66.01
CDX89206	Canola	mitochondrion	64.34	65.97
CDY19007	Canola	mitochondrion	64.34	65.97
VIT_11s0037g00990.t01	Wine grape	mitochondrion	68.03	65.87
TraesCS1D01G379000.4	Wheat	mitochondrion	68.65	65.82
TraesCS1B01G392400.1	Wheat	mitochondrion	68.65	65.82
Zm00001d025892_P003	Maize	mitochondrion, plastid	68.24	65.42
EES13629	Sorghum	plastid	67.42	64.64
Solyc07g006160.2.1	Tomato	mitochondrion	65.57	63.62
PGSC0003DMT400029004	Potato	mitochondrion	65.37	63.42
CDX72246	Canola	mitochondrion	64.14	62.73
AT4G30490.1	Thale cress	mitochondrion	63.52	62.37
CDY39208	Canola	mitochondrion	63.93	62.28
KRH02973	Soybean	mitochondrion	63.32	61.43
KRH72370	Soybean	mitochondrion	62.3	60.68
Os08t0265500-01	Rice	mitochondrion	17.42	46.96
GSMUA_AchrUn_...	Banana	nucleus	7.38	21.82
GSMUA_AchrUn_...	Banana	cytosol	9.84	21.33
GSMUA_AchrUn_...	Banana	plastid	7.79	16.1

Protein Annotations

EnsemblPlants:GSMUA_Achr3P28020_001	EnsemblPlants:GSMUA_Achr3T28020_001	EnsemblPlantsGene:GSMUA_Achr3G28020_001	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:ATPase_AFG1-like	InterPro:P-loop_NTPase	PANTHER:PTHR12169	PANTHER:PTHR12169:SF6
PFAM:PF03969	SUPFAM:SSF52540	UniParc:UPI000295DFC5	UniProt:M0SIG8	MapMan:35.2	:

Description

Putative Lactation elevated protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G28020_001]

Coordinates

chr3:+:27412293..27417346

Molecular Weight (calculated)

55376.7 Da

IEP (calculated)

8.155

GRAVY (calculated)

-0.283

Length

488 amino acids

Sequence
(BLAST)

001: MRTSARFLQQ VRCLCRFQRG EISANRLGKT NRVSILNHPV VGALVGREAD RYLNQSLLFF RAVCTSGGSC DVGGAGPLLE YEKRITSGEL VGGDSFQIDT
101: LQALQRLYEE LVEHEESCQL DRYKSSQKSG RRRWLWSRFM PQSTYSPVKG LYLYGGVGTG KTMLMDLFFN QLPSNWRKKR IHFHDFMLNV HSRLQMHKGV
201: ADPLEVVAAE ISDESILLCL DEFMVTDVAD ALILNRLFCH LFSNGVVLVS TSNRAPDQLY EGGLQRDLFL PFIETLKERC VIHEISSSTD YRKMGSAENG
301: YYFIGKYSGL LREKFHQLIG AEKPGPQVVE VVMGRKLQVP LGANGCAYFP FEDLCDRPLG AADYFGLFKK FHTLALEGVP KFGIHNRTAA YRFVTLVDVM
401: YENKARLLCT AEASPVELFE RIVTVMDAQK IYPRSSSRSK KTDDIDLCVD NELGFAKDRT ISRLTEMNSK EYLEQHEANV KDNKTPQK

Best Arabidopsis Sequence Match ( AT4G28070.2 )
(BLAST)

001: MRLLLLSLRR VTLFSRHQRY AFAPIHNCLI SINPSTSSSS LFSASSFCSS PHSNGDGKIA GPLVEYERRI VAGELLDGDL CQLGTLRELQ RLYDELVQSA
101: DACRLDRYSA SAKSTRSNWF WNKFVSHSSV SPVKGLYLYG GVGTGKTMLM DLFFHQLPAS WRTQRIHFHN FMLSVHSRLQ KHKGLEDPLE VVGLEIADEA
201: ILLCLDEFMV NDVADALILN RLFRHLFNNG IILVATSNRA PDNLYEGGLQ RDLFLPFIST LKERCVVREI GSSVDYRKLT SAEEGFYFIG KDISGLLKQK
301: FQLLVGDQPA GPQVVEVVMG RKLQVPLAAD GCAYFLFEEL CDRPLGAADY LGLFKKFHTL ALEGVPFFGL HNRTAAYRFV TLVDVMYENK ARLLCTAEGS
401: PLELLERIVT ISDAQQIAPR TSSRSRKSDD PDLCVDNELG FAKDRTISRL TEMNSKEYLE QHSRMLQEKQ PSS

Arabidopsis Description

AFG1-like ATPase family protein [Source:UniProtKB/TrEMBL;Acc:Q5XET7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.