CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX84035
CDX86457
CDX96860
CDY02176
CDY23090
CDY49093
CDY58518
CDY62016

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G30490.1	CDX84035	AT1G14340.1	21798944
AT4G30490.1	CDX96860	AT1G14340.1	21798944
AT4G30490.1	CDY49093	AT1G14340.1	21798944
AT4G30490.1	CDY62016	AT1G14340.1	21798944
AT4G30490.1	CDX86457	AT3G27960.1	21798944
AT4G30490.1	CDY58518	AT3G27960.1	21798944
AT4G30490.1	CDY02176	AT5G61010.1	21798944
AT4G30490.1	CDY23090	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024072.1-P	Field mustard	cytosol	77.96	98.73
CDY39208	Canola	mitochondrion	97.8	97.41
AT4G30490.1	Thale cress	mitochondrion	86.17	86.52
CDX89206	Canola	mitochondrion	65.53	68.7
CDY19007	Canola	mitochondrion	65.53	68.7
VIT_11s0037g00990.t01	Wine grape	mitochondrion	66.73	66.07
PGSC0003DMT400029004	Potato	mitochondrion	65.93	65.41
Solyc07g006160.2.1	Tomato	mitochondrion	65.73	65.21
KRH72370	Soybean	mitochondrion	65.33	65.07
GSMUA_Achr3P28020_001	Banana	mitochondrion	62.73	64.14
KRH02973	Soybean	mitochondrion	64.13	63.62
TraesCS1A01G372400.2	Wheat	mitochondrion	61.92	61.31
KXG26754	Sorghum	plastid	61.52	60.31
GSMUA_Achr1P10190_001	Banana	mitochondrion	61.72	60.16
TraesCS1B01G392400.1	Wheat	mitochondrion	61.12	59.92
HORVU1Hr1G082690.6	Barley	mitochondrion	60.72	59.88
Zm00001d025892_P003	Maize	mitochondrion, plastid	60.92	59.73
Zm00001d002967_P005	Maize	mitochondrion	60.12	59.52
TraesCS1D01G379000.4	Wheat	mitochondrion	60.32	59.14
EES13629	Sorghum	plastid	59.52	58.35
Os08t0265500-01	Rice	mitochondrion	15.23	41.99
CDY11525	Canola	mitochondrion	27.25	23.29
CDX76756	Canola	mitochondrion	27.25	23.29

Protein Annotations

EnsemblPlants:CDX72246	EnsemblPlantsGene:GSBRNA2T00099714001	Gene3D:3.40.50.300	GO:A0A078C5D1	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:ATPase_AFG1-like	InterPro:P-loop_NTPase	PANTHER:PTHR12169	PANTHER:PTHR12169:SF6
PFAM:PF03969	ProteinID:CDX72246	ProteinID:CDX72246.1	SEG:seg	SUPFAM:SSF52540	UniParc:UPI0004EE48B9
MapMan:35.2	:	:	:	:	:

Description

BnaC07g42680D

Coordinates

chrLK031796:-:236095..239044

Molecular Weight (calculated)

56126.4 Da

IEP (calculated)

8.262

GRAVY (calculated)

-0.185

Length

499 amino acids

Sequence
(BLAST)

001: MRPVFRSSSS LSRIRWALRN QERNSSTFSS KSRKLLVGVH QNEALVNANT CNSTLFSRLS FSRGLSAEAV EAADAAIKLT VSSSADVNRT GPLVEYERRI
101: SDGELMTGDI CQLGALKELQ RLHDQLVESV DTCRLDRYNT SDKSSRCRWF WSRIMPQSTV SPVKGLYLYG GVGTGKTMLM DLFFDQLPCT WKKQRIHFHD
201: FMLTVHSRLQ KHKGLSDPLE VVAQEIAHDA ILLCLDEFMV TDVADALILN RLFGHLFSNG IILVATSNRN PDKLYEGGLQ RDLFLPFIAS LKERNVVHEI
301: GSAVDYRKLT SAEQGFYFIG TDLSTLLKQK FQELIGGNVV ARPQVVEVVM GRKLQVSLGA NGCAYFPFEE LCDRPLGAAD YFGLFKKFHT LALEGVPVFG
401: LHNRTAAYRF VTLVDVMYEN RARLLCTAEA TPQELLEKIV TISDAKSMSP RTSSRSRKND VSELCVDNEL GFAKDRTISR LTEMNSKEYL EQHAITHNL

Best Arabidopsis Sequence Match ( AT4G30490.1 )
(BLAST)

001: MRPIIRLSSL SRIRWALRNN QERYSSTFYS KSRKLLIGVN QNQALLNTNT DNSSLYSRSS IFRGLSAEAV EAADPATTRV TVSDVNRTGP LVEYERRISN
101: GELMTGDICQ ISALRELQRL YDELVDSVDT CRLDRYNTSD KSSRSRWFWS RLMPQTSYSP VKGLYLYGGV GTGKTMLMDL FFDQLPCTWK KQRIHFHDFM
201: LSVHSRLQKH KGLSDPLEVV AQEIAHDAIL LCLDEFMVTD VADALILNRL FGHLFSNGVI LVATSNRNPD KLYEGGLQRD LFLPFISSLK ERSVVHEIGS
301: AVDYRKLTSA EQGFYFIGKD LSTLLKQKFR QLIGDNVVAR PQVVEVVMGR KLQIPLGANG CAYFPFEELC DRPLGAADYF GLFKKFHTLA LDEIPVFGLH
401: NRTAAYRFVT LVDVMYENRA RLLCTAEANP QELLEKIITI SEAKSMGPRT SSRSRKNDVT ELCVDNELGF AKDRTISRLT EMNSKEYLEH HAITHNL

Arabidopsis Description

AFG1-like ATPase family protein [Source:UniProtKB/TrEMBL;Acc:Q8L517]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.