Factsheet for Bra024072.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
endoplasmic reticulum 1
cytosol 3
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012987.1-P
Bra016705.1-P
Bra019660.1-P
Bra025315.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G30490.1	Bra016705.1-P	AT1G14340.1	21798944
AT4G30490.1	Bra019660.1-P	AT1G14340.1	21798944
AT4G30490.1	Bra025315.1-P	AT3G27960.1	21798944
AT4G30490.1	Bra012987.1-P	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39208	Canola	mitochondrion	99.75	78.44
CDX72246	Canola	mitochondrion	98.73	77.96
AT4G30490.1	Thale cress	mitochondrion	92.64	73.44
Bra026286.1-P	Field mustard	mitochondrion	78.43	65.19
Solyc07g006160.2.1	Tomato	mitochondrion	78.17	61.23
VIT_11s0037g00990.t01	Wine grape	mitochondrion	78.17	61.11
PGSC0003DMT400029004	Potato	mitochondrion	77.92	61.03
KRH72370	Soybean	mitochondrion	77.16	60.68
GSMUA_Achr3P28020_001	Banana	mitochondrion	74.37	60.04
KRH02973	Soybean	mitochondrion	75.89	59.44
GSMUA_Achr1P10190_001	Banana	mitochondrion	74.11	57.03
TraesCS1A01G372400.2	Wheat	mitochondrion	71.57	55.95
Zm00001d025892_P003	Maize	mitochondrion, plastid	71.57	55.4
KXG26754	Sorghum	plastid	71.32	55.21
Zm00001d002967_P005	Maize	mitochondrion	70.56	55.16
TraesCS1B01G392400.1	Wheat	mitochondrion	71.07	55.01
HORVU1Hr1G082690.6	Barley	mitochondrion	70.3	54.74
TraesCS1D01G379000.4	Wheat	mitochondrion	70.3	54.42
EES13629	Sorghum	plastid	69.54	53.83
Os08t0265500-01	Rice	mitochondrion	12.18	26.52
Bra007794.1-P	Field mustard	mitochondrion	33.5	22.6

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.2	InterPro:ATPase_AFG1-like	EnsemblPlantsGene:Bra024072	EnsemblPlants:Bra024072.1	EnsemblPlants:Bra024072.1-P
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005516	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0009507
GO:GO:0009536	UniProt:M4E5L8	InterPro:P-loop_NTPase	PFAM:PF03969	PANTHER:PTHR12169	PANTHER:PTHR12169:SF6
SUPFAM:SSF52540	UniParc:UPI0002540E25	:	:	:	:

Description

AT4G30490 (E=5e-217) | AFG1-like ATPase family protein

Coordinates

chrA03:-:27840779..27842919

Molecular Weight (calculated)

44576.9 Da

IEP (calculated)

7.566

GRAVY (calculated)

-0.147

Length

394 amino acids

Sequence
(BLAST)

001: MTGDICQLGA LKELQRLHDQ LVESVDTCRL DRYNTSDKSS RSRWFWSRIM PQSSVSPVKG LYLYGGVGTG KTMLMDLFFD QLPCTWKKQR IHFHDFMLTV
101: HSRLQKHKGL SDPLEVVAQE IAHDAILLCL DEFMVTDVAD ALILNRLFGH LFSNGIILVA TSNRNPDKLY EGGLQRDLFL PFIASLKERN VVHEIGSAVD
201: YRKLTSAEQG FYFIGTDLST LLKQKFQELI GGNVVARPQV VEVVMGRKLQ VPLGAKGCAY FPFEELCDRP LGAADYFGLF KKFHTLALEG VPVFGLHNRT
301: AAYRFVTLVD VMYENRARLL CTAEATPQEL LEKIVTISDA KSMSPRTSSR SRKNDVSELC VDNELGFAKD RTISRLTEMN SKEYLEQHAI THNL

Best Arabidopsis Sequence Match ( AT4G30490.1 )
(BLAST)

001: MRPIIRLSSL SRIRWALRNN QERYSSTFYS KSRKLLIGVN QNQALLNTNT DNSSLYSRSS IFRGLSAEAV EAADPATTRV TVSDVNRTGP LVEYERRISN
101: GELMTGDICQ ISALRELQRL YDELVDSVDT CRLDRYNTSD KSSRSRWFWS RLMPQTSYSP VKGLYLYGGV GTGKTMLMDL FFDQLPCTWK KQRIHFHDFM
201: LSVHSRLQKH KGLSDPLEVV AQEIAHDAIL LCLDEFMVTD VADALILNRL FGHLFSNGVI LVATSNRNPD KLYEGGLQRD LFLPFISSLK ERSVVHEIGS
301: AVDYRKLTSA EQGFYFIGKD LSTLLKQKFR QLIGDNVVAR PQVVEVVMGR KLQIPLGANG CAYFPFEELC DRPLGAADYF GLFKKFHTLA LDEIPVFGLH
401: NRTAAYRFVT LVDVMYENRA RLLCTAEANP QELLEKIITI SEAKSMGPRT SSRSRKNDVT ELCVDNELGF AKDRTISRLT EMNSKEYLEH HAITHNL

Arabidopsis Description

AFG1-like ATPase family protein [Source:UniProtKB/TrEMBL;Acc:Q8L517]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.