Factsheet for Zm00001d025892_P003

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

mitochondrion 4
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002122_P007
Zm00001d017793_P001
Zm00001d026425_P003
Zm00001d043365_P001
Zm00001d051589_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G30490.1	Zm00001d002122_P007	AT1G14340.1	21798944
AT4G30490.1	Zm00001d026425_P003	AT1G14340.1	21798944
AT4G30490.1	Zm00001d017793_P001	AT3G27960.1	21798944
AT4G30490.1	Zm00001d051589_P001	AT3G27960.1	21798944
AT4G30490.1	Zm00001d043365_P001	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002967_P005	Maize	mitochondrion	91.36	92.26
TraesCS1A01G372400.2	Wheat	mitochondrion	79.37	80.16
HORVU1Hr1G082690.6	Barley	mitochondrion	78.59	79.05
TraesCS1D01G379000.4	Wheat	mitochondrion	78.78	78.78
TraesCS1B01G392400.1	Wheat	mitochondrion	78.59	78.59
Bra024072.1-P	Field mustard	cytosol	55.4	71.57
Os08t0265500-01	Rice	mitochondrion	25.34	71.27
GSMUA_Achr3P28020_001	Banana	mitochondrion	65.42	68.24
GSMUA_Achr1P10190_001	Banana	mitochondrion	66.6	66.21
PGSC0003DMT400029004	Potato	mitochondrion	65.03	65.81
Solyc07g006160.2.1	Tomato	mitochondrion	65.03	65.81
AT4G28070.2	Thale cress	mitochondrion	59.33	63.85
VIT_11s0037g00990.t01	Wine grape	mitochondrion	62.67	63.29
Bra026286.1-P	Field mustard	mitochondrion	58.94	63.29
CDX89206	Canola	mitochondrion	59.14	63.24
CDY19007	Canola	mitochondrion	59.14	63.24
KRH02973	Soybean	mitochondrion	61.1	61.83
KRH72370	Soybean	mitochondrion	60.71	61.68
CDX72246	Canola	mitochondrion	59.73	60.92
CDY39208	Canola	mitochondrion	59.92	60.88
AT4G30490.1	Thale cress	mitochondrion	59.33	60.76
Zm00001d034868_P002	Maize	plastid	13.95	17.53

Protein Annotations

EntrezGene:100280664	Gene3D:3.40.50.300	MapMan:35.2	ProteinID:AQK44941.1	ProteinID:AQK44942.1	ProteinID:AQK44946.1
ProteinID:AQK44947.1	ProteinID:AQK44949.1	ProteinID:AQK44950.1	ProteinID:AQK44955.1	InterPro:ATPase_AFG1-like	EMBL:BT064090
EMBL:BT064633	UniProt:C0P721	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
InterPro:P-loop_NTPase	PFAM:PF03969	PANTHER:PTHR12169	PANTHER:PTHR12169:SF6	SUPFAM:SSF52540	UniParc:UPI0001948B51
EnsemblPlantsGene:Zm00001d025892	EnsemblPlants:Zm00001d025892_P003	EnsemblPlants:Zm00001d025892_T003	SEG:seg	:	:

Description

ATPase

Coordinates

chr10:+:133211005..133217035

Molecular Weight (calculated)

57296.9 Da

IEP (calculated)

6.522

GRAVY (calculated)

-0.241

Length

509 amino acids

Sequence
(BLAST)

001: MRSVVRSLRQ LRRFIQHYAE GNSQATRLFG LQNALIMCGS TPRSLSMLRR NGEISRFASP GMELMRSMFS NVAAGSIKDI GRGGPMVEYE RRIASGDLVD
101: GDSFQVDTIQ QLQGLYEELI ENGEDCQLDR YKSSEKSGRS RWLWSRLITQ PSSFAPVKGL YLYGGVGTGK TMLMDLFYEQ LPSNWRKKRI HFHDFMLNVH
201: SRLQMHKGVS DPLDVVAAEI SDEAIILCLD EFMVTDVADA MILNRLFRQL FSKGIILVST SNRAPDKLYE GGLQRDLFLP FIDTLKERCI VHPIGSAVDY
301: RQLGSAEQGF YFVGKHYSTL LKQKLQSLIG DEEPSPQTVE VIMGRKLQVS LGANGCAYFP FEDLCDRPLG AADYFGLFKK FHTLALDGVP KFGSSNRTAA
401: YRFVTLIDVM YENKARLLCT AEAGPVELFE NIMTLAEAQK VSPRSSRSQK SDDPDLCVDN ELGFAKDRTI SRLTEINSRE YLEDFEMRLG QQQLLPLQAL
501: DNGGDVVLA

Best Arabidopsis Sequence Match ( AT2G25530.1 )
(BLAST)

001: MSRTGPHRVW QIWHPSFDIS TKPTKEIYTD TNKPNQQYDK RSIFHHLNRD RKASLQRRNH NRSLKQQIMP NVSQISTVLR LAFSCKRRLS NGLHFVARSY
101: STSDPPKQPS GPLTNYSKLV EQGRLQHDPY QEKVVSAFEN LFGRLEHFEK QMEDYHVRLA EWEKKREEER RKLMVEEAEK KEDDGMWASV NKQGQKLLGR
201: WVLGRRQMNV EPGVGKWVSY LNRERKLDSI VGSRPAVPPA PKGLYIYGNV GCGKTMLMDM FYGATDGIIR HRQRFHFHEA MLKINEQMHK YWKENGAEKP
301: MQYSISSWIM NLPVDEKVKE WLAGEEFYKQ QLQMKHILPA VADKFLVDQQ SSKKGASILC FDEIQTVDVF AIVALSGIMS RLLTTGTVLV ATSNRAPREL
401: NQDGMQKEIF DKFISKLEKH CEIISIGSEV DYRRVAAKNS AENVHYLWPL NDAVLEEFEK MWRQVTDQYG GEITSATLPV MFGRTVEVPE SCSGVARFTF
501: EYLCGRPVGA ADYIAVAKNY HTIFISDIPA MSMEIRDKAR RFITLVDELY NHHCCLVSSA ETAIDELFQG TAEGTLFDLE SFQFETETED SRLRRDVLAE
601: GSISAAGSPS SIVSMLSGEE EMFAFARAAS RLIEMQTPLY LEGVRFLHPY FHQQK

Arabidopsis Description

AFG1-like ATPase family protein [Source:UniProtKB/TrEMBL;Acc:Q9SKJ6]
SUBAcon: [vacuole,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.