CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93305
KRH54704
KRH56614
KRH63230
KRH69305

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G30490.1	KRH69305	AT1G14340.1	21798944
AT4G30490.1	KRG93305	AT3G27960.1	21798944
AT4G30490.1	KRH56614	AT3G27960.1	21798944
AT4G30490.1	KRH54704	AT5G61010.1	21798944
AT4G30490.1	KRH63230	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72370	Soybean	mitochondrion	92.45	92.81
Bra024072.1-P	Field mustard	cytosol	59.44	75.89
Bra026286.1-P	Field mustard	mitochondrion	64.21	68.14
CDX89206	Canola	mitochondrion	64.02	67.65
CDY19007	Canola	mitochondrion	64.02	67.65
AT4G28070.2	Thale cress	mitochondrion	63.42	67.44
VIT_11s0037g00990.t01	Wine grape	mitochondrion	67.2	67.06
Solyc07g006160.2.1	Tomato	mitochondrion	66.2	66.2
PGSC0003DMT400029004	Potato	mitochondrion	66.2	66.2
CDY39208	Canola	mitochondrion	64.02	64.27
AT4G30490.1	Thale cress	mitochondrion	63.42	64.19
CDX72246	Canola	mitochondrion	63.62	64.13
GSMUA_Achr3P28020_001	Banana	mitochondrion	61.43	63.32
GSMUA_Achr1P10190_001	Banana	mitochondrion	63.02	61.91
Zm00001d002967_P005	Maize	mitochondrion	61.83	61.71
TraesCS1A01G372400.2	Wheat	mitochondrion	61.63	61.51
KXG26754	Sorghum	plastid	62.03	61.3
Zm00001d025892_P003	Maize	mitochondrion, plastid	61.83	61.1
EES13629	Sorghum	plastid	60.84	60.12
HORVU1Hr1G082690.6	Barley	mitochondrion	60.24	59.88
TraesCS1B01G392400.1	Wheat	mitochondrion	60.44	59.73
TraesCS1D01G379000.4	Wheat	mitochondrion	60.44	59.73
Os08t0265500-01	Rice	mitochondrion	16.3	45.3
KRH05135	Soybean	mitochondrion	27.04	22.93

Protein Annotations

EMBL:ACUP02010333	EnsemblPlants:KRH02973	EnsemblPlantsGene:GLYMA_17G069900	EntrezGene:100789814	Gene3D:3.40.50.300	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:ATPase_AFG1-like	InterPro:P-loop_NTPase	PANTHER:PTHR12169
PANTHER:PTHR12169:SF6	PFAM:PF03969	ProteinID:KRH02972.1	ProteinID:KRH02973	ProteinID:KRH02973.1	SUPFAM:SSF52540
UniParc:UPI000233E3BD	UniProt:K7MKA9	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:5482805..5489083

Molecular Weight (calculated)

56714.0 Da

IEP (calculated)

6.788

GRAVY (calculated)

-0.251

Length

503 amino acids

Sequence
(BLAST)

001: MRNVLRSLRQ LRPAFQRQDC VLIIVNVAEE PPCHIGKSCH IHSSAFRFVD HAETNFKNHL FTTTTRPLST DAAKLTNRET SKAGPLVEYE RRITNGELVE
101: GDACQVDTLT ELQRLYDELV ESADICQLDR NSEKPVRSGW LWSRLLSHPS YSPVKGLYLY GGVGTGKTML MDLFFYQLPS NWRKKRIHFH DFMLNVHSML
201: QKHKGLSDPL DVVAGEISDD AILLCLDEFM VTDVADALVL NRLFRHLFNK GIILVATSNR APDNLYEGGL QRDLFLPFIA ALKERCVVHE IGSSIDYRKM
301: TSGEQGFYLV GTDLSGFLKE KFQQLIGEGT ATPTPQEVEV VMGRTLHVPL GANGCAYFPF EEICDRPLGA ADYFGLFKKF HTLVLDGIPI FGLHNKSAAH
401: RFVTLVDVMY ENKARLLCTA EGSPKDLFEK IVTVSEAKNL APRTSSRSRK NDDSNLCVDN ELGFAKDRTI SRLTEINSKE YLEHHAAMLA EKKERVDQNA
501: VEA

Best Arabidopsis Sequence Match ( AT4G28070.1 )
(BLAST)

001: MRLLLLSLRR VTLFSRHQRY AFAPIHNCLI SINPSTSSSS LFSASSFCSS PHSNGDGKIA GPLVEYERRI VAGELLDGDL CQLGTLRELQ RLYDELVQSA
101: DACRLDRYSA SAKSTRSNWF WNKFVSHSSV SPVKGLYLYG GVGTGKTMLM DLFFHQLPAS WRTQRIHFHN FMLSVHSRLQ KHKGLEDPLE VVGLEIADEA
201: ILLCLDEFMV NDVADALILN RLFRHLFNNG IILVATSNRA PDNLYEGGLQ RDLFLPFIST LKERCVVREI GSSVDYRKLT SAEEGFYFIG KDISGLLKQK
301: FQLLVGDQPA GPQVVEVVMG RKLQVPLAAD GCAYFLFEEL CDRPLGAADY LGLFSVPFFG LHNRTAAYRF VTLVDVMYEN KARLLCTAEG SPLELLERIV
401: TISDAQQIAP RTSSRSRKSD DPDLCVDNEL GFAKDRTISR LTEMNSKEYL EQHSRMLQEK QPSS

Arabidopsis Description

AFG1-like ATPase family protein [Source:UniProtKB/TrEMBL;Acc:Q5XET7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.