CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89352
KRG92955
KRG94361
KRG96730
KRG98294
KRG98682
KRH04183
KRH05375
KRH06045
KRH07097
KRH15642
KRH17729
KRH20359
KRH26285
KRH28159
KRH28426
KRH28829
KRH30354
KRH30863
KRH32712
KRH33832
KRH46251
KRH50137
KRH57475
KRH68446
KRH73804
KRH77047
KRH77327

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14340.1	KRG89352	AT1G08480.1	21798944
AT1G14340.1	KRG92955	AT1G09180.1	21798944
AT1G14340.1	KRG96730	AT1G09180.1	21798944
AT1G14340.1	KRH33832	AT1G09180.1	21798944
AT1G14340.1	KRH68446	AT1G09180.1	21798944
AT1G14340.1	KRG92955	AT1G56330.1	21798944
AT1G14340.1	KRG96730	AT1G56330.1	21798944
AT1G14340.1	KRH33832	AT1G56330.1	21798944
AT1G14340.1	KRH68446	AT1G56330.1	21798944
AT1G14340.1	KRG94361	AT3G01660.1	21798944
AT1G14340.1	KRH07097	AT3G01660.1	21798944
AT1G14340.1	KRH17729	AT3G07670.1	21798944
AT1G14340.1	KRH06045	AT3G11730.1	21798944
AT1G14340.1	KRH26285	AT3G11730.1	21798944
AT1G14340.1	KRH28426	AT3G50110.1	21798944
AT1G14340.1	KRH77047	AT3G50110.1	21798944
AT1G14340.1	KRG92955	AT4G02080.1	21798944
AT1G14340.1	KRG96730	AT4G02080.1	21798944
AT1G14340.1	KRH33832	AT4G02080.1	21798944
AT1G14340.1	KRH68446	AT4G02080.1	21798944
AT1G14340.1	KRH05375	AT4G31830.1	21798944
AT1G14340.1	KRH15642	AT4G31830.1	21798944
AT1G14340.1	KRH04183	AT5G47310.1	21798944
AT1G14340.1	KRH28159	AT5G47310.1	21798944
AT1G14340.1	KRH57475	AT5G47310.1	21798944
AT1G14340.1	KRH77327	AT5G47310.1	21798944
AT1G14340.1	KRG98682	AT5G55200.1	21798944
AT1G14340.1	KRH46251	AT5G55200.1	21798944
AT1G14340.1	KRH73804	AT5G55200.1	21798944
AT1G14340.1	KRG98294	AT5G58750.1	21798944
AT1G14340.1	KRH30354	AT5G58750.1	21798944
AT1G14340.1	KRH20359	AT5G60860.1	21798944
AT1G14340.1	KRH30863	AT5G60860.1	21798944
AT1G14340.1	KRH32712	AT5G60860.1	21798944
AT1G14340.1	KRH50137	AT5G60860.1	21798944
AT1G14340.1	KRH28829	AT5G66110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0026g01970.t01	Wine grape	cytosol, nucleus, plastid	58.08	68.7
Bra019660.1-P	Field mustard	cytosol	53.26	63.52
AT1G14340.1	Thale cress	nucleus	53.26	63.52
CDY62016	Canola	nucleus	50.86	63.25
CDX96860	Canola	nucleus	52.92	63.11
CDY49093	Canola	cytosol	52.92	62.86
Bra016705.1-P	Field mustard	nucleus	52.58	62.7
CDX84035	Canola	nucleus	52.23	62.3
PGSC0003DMT400065786	Potato	cytosol, nucleus, plastid	51.89	61.63
GSMUA_Achr3P19960_001	Banana	cytosol	51.2	61.57
Zm00001d026425_P003	Maize	cytosol	45.7	54.51
TraesCS2D01G523400.1	Wheat	nucleus	45.02	53.69
TraesCS2B01G551100.1	Wheat	nucleus	45.02	53.69
TraesCS2A01G521600.1	Wheat	nucleus	44.67	53.28
Solyc05g007200.2.1	Tomato	mitochondrion	55.33	52.79
EES12950	Sorghum	cytosol, nucleus, plastid	43.99	52.46
HORVU2Hr1G115210.1	Barley	cytosol, nucleus, plastid	45.02	52.19
KRH01160	Soybean	cytosol, nucleus, plastid	44.67	50.98
KRH40110	Soybean	cytosol	45.02	50.78
Zm00001d002122_P007	Maize	cytosol, nucleus, plastid	43.3	50.6
Os04t0641400-02	Rice	plastid	47.77	48.43
KRH74377	Soybean	endoplasmic reticulum	33.33	34.77
KRG94865	Soybean	cytosol	28.87	34.01
KRH06674	Soybean	cytosol	31.96	33.7
KRH39571	Soybean	nucleus	32.3	33.57
KRH24024	Soybean	nucleus	30.24	30.14
KRH49688	Soybean	nucleus	31.62	29.68
KRH70369	Soybean	cytosol	30.58	28.71

Protein Annotations

EntrezGene:100805907	Gene3D:3.30.70.330	MapMan:35.1	EMBL:ACUP02000701	EnsemblPlantsGene:GLYMA_02G019000	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:K7K5Y9
EnsemblPlants:KRH69305	ProteinID:KRH69305	ProteinID:KRH69305.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR44136	PANTHER:PTHR44136:SF7	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI000295CF2F	InterPro:Vip1-like_RRM_plant	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:1658179..1660902

Molecular Weight (calculated)

31541.9 Da

IEP (calculated)

5.696

GRAVY (calculated)

-0.226

Length

291 amino acids

Sequence
(BLAST)

001: MKLYNKTQDS FNLILLQKSL REEEITVCDS IASVSSIPAP LLFRKHKMNS GGYAVEVTGL SPKATDKDVR DFFAFSGVIE NVEIIRSGDY ACTAYVTFKD
101: AYAQETACLL SGATILDQRV CITRWGHYED EFDFWNQPSY SHEDETASTT PQSNQFVSSA GEAVTMAQEV VRTMLSKGYV LSKDALAKAK DFDESHQVSA
201: TATAKVSELS QRIGLSDKIS AGIGAVKSVD QRYNVSETTM AAASTAGRSV AAAANSLVNS SYFSKGALWV SGALTRAAQV ASDMGTHRDR Q

Best Arabidopsis Sequence Match ( AT1G14340.1 )
(BLAST)

001: MDHQFGYGVE VTGLSPSVTH NDLIDFFSFS GTIQDIDIVR SGEQACTAYV MFKDSYSQET AVLLTGATIL DQRVCITRWG QHHEEFDFWN ATSRGFEDES
101: DSQHYAQRSE FNAGEAVTKA QEVVKIMLAT GFVLGKDALS KAKAFDESHG VSAAAVARVS QLEQRIGLTD KIFTGLEAVR MTDQRYHVSD TAKSAVFATG
201: RTAAAAATSV VNSSYFSSGA LWLSGALERA AKAASDLGTR GSRQ

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q949S4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.