CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02173
KRH08874
KRH11287
KRH16140
KRH20991
KRH35244
KRH38387
KRH50940

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26780.1	KRH02173	AT4G15560.1	24104567
AT4G26780.1	KRH11287	AT4G15560.1	24104567
AT4G26780.1	KRH16140	AT4G15560.1	24104567
AT4G26780.1	KRH20991	AT4G15560.1	24104567
AT4G26780.1	KRH50940	AT4G15560.1	24104567
AT5G55200.1	KRH08874	AT4G25660.1	21798944
AT5G55200.1	KRH35244	AT4G25660.1	21798944
AT5G55200.1	KRH38387	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46251	Soybean	mitochondrion	92.07	92.39
CDY14299	Canola	mitochondrion	55.86	55.86
CDX97366	Canola	mitochondrion	53.45	54.39
CDY17310	Canola	mitochondrion	54.48	54.11
KRH73804	Soybean	mitochondrion	64.14	53.91
Bra002925.1-P	Field mustard	mitochondrion	53.45	52.9
CDY19906	Canola	mitochondrion	52.76	52.4
PGSC0003DMT400057433	Potato	mitochondrion	52.76	51.86
VIT_19s0090g01190.t01	Wine grape	mitochondrion	57.93	51.85
Solyc07g064930.2.1	Tomato	mitochondrion, plastid	53.1	51.51
GSMUA_Achr5P27100_001	Banana	mitochondrion	52.76	51.17
Bra010427.1-P	Field mustard	mitochondrion	55.17	51.12
CDX92796	Canola	mitochondrion	56.55	51.09
CDX89303	Canola	mitochondrion	56.55	50.46
AT4G26780.1	Thale cress	mitochondrion	56.9	50.46
AT5G55200.1	Thale cress	mitochondrion	51.72	49.67
Bra026403.1-P	Field mustard	mitochondrion	47.24	48.75
EER96498	Sorghum	mitochondrion	50.69	48.2
HORVU5Hr1G053680.2	Barley	mitochondrion	50.0	48.17
TraesCS5A01G176600.3	Wheat	mitochondrion	50.0	48.17
TraesCS5B01G173300.1	Wheat	mitochondrion	50.0	48.17
Os09t0284400-01	Rice	mitochondrion	50.0	48.01
TraesCS5D01G180300.1	Wheat	mitochondrion	49.66	47.84
Os08t0338700-01	Rice	mitochondrion	50.34	46.95
Zm00001d005513_P001	Maize	mitochondrion	48.97	46.86
PGSC0003DMT400033475	Potato	mitochondrion	52.76	45.54
Zm00001d050123_P001	Maize	mitochondrion	50.34	43.98
Solyc12g014470.1.1	Tomato	mitochondrion	50.34	43.58
KXG25038	Sorghum	plastid	50.34	40.67

Protein Annotations

EntrezGene:100812682	MapMan:19.1.3.3	Gene3D:2.30.22.10	Gene3D:3.90.20.20	EMBL:ACUP02010911	EMBL:BT095415
UniProt:C6TCW7	ncoils:Coil	EnsemblPlantsGene:GLYMA_18G090400	GO:GO:0000166	GO:GO:0000774	GO:GO:0001405
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	GO:GO:0006457	GO:GO:0006810	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0030150	GO:GO:0030234	GO:GO:0042803
GO:GO:0050790	GO:GO:0051082	GO:GO:0051087	InterPro:GrpE	InterPro:GrpE_coiled_coil	InterPro:GrpE_head
InterPro:IPR009012	InterPro:IPR013805	EnsemblPlants:KRG98682	ProteinID:KRG98682	ProteinID:KRG98682.1	HAMAP:MF_01151
PFAM:PF01025	PRINTS:PR00773	ScanProsite:PS01071	PANTHER:PTHR21237	PANTHER:PTHR21237:SF23	SUPFAM:SSF51064
SUPFAM:SSF58014	UniParc:UPI0001B16359	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:8959131..8962600

Molecular Weight (calculated)

32433.1 Da

IEP (calculated)

5.299

GRAVY (calculated)

-0.542

Length

290 amino acids

Sequence
(BLAST)

001: MFAYRVLSRS SAILSRSFTL FSVSRNSQPF STTLSNNFHS LLHPSPNKLI PVQTNFLNSS LTSRFGFSST ASHEHASEEA KVSDQSEQAE AADQTKESDV
101: ESECDLSRDD LIKLVAEKEQ LLKLKHKEIE KMQDKVLRTY AEMENVMDRT RREAENSKKF AIQNFAKSLL DVADNLGRAS SVVKDNFSKI ESPEESSEAA
201: QLLKTLLEGV EMTEKQLAEV LKKFGVEKFD PTNEPFDPHM HNAIFQIPDA SKAPGTVGVV LKAGYKLYDR VLRPAEVGVT QEVEDNKAAE

Best Arabidopsis Sequence Match ( AT4G26780.1 )
(BLAST)

001: MLVLRILSRV TRNAGIRSSL SAVTLPARNQ TPVFSSRFHS LAHDFSHKLV PAQMSMMDSF ALQRFNFSSS TSPESDEKKT HTEASKTSEE KPTAEANQPG
101: LDSESKDSVT DSAKRKRKGA KGAASSSSES DSESDDDELS ADDLVKLVAE KEELLSEKEE EIKQLKDKVL RTYAEMENVM DRTRRDAENT KKYAVQNFAK
201: SLLDVADNLG RASSVVKESF SKLDTSEDSA GAAPLLKTLL EGVEMTEKQL AEVFKKFGME KYDPINEPFD PNRHNAVFQV PDASKPEGTV AHVLKSGYTL
301: YDRVIRPAEV GVTQGGENQE EKKESDA

Arabidopsis Description

AR192GrpE protein homolog 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LB47]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.