Factsheet for VIT_19s0090g01190.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g02130.t01
VIT_16s0050g01050.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26780.1	VIT_05s0020g02130.t01	AT4G15560.1	24104567
AT5G55200.1	VIT_16s0050g01050.t01	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P27100_001	Banana	mitochondrion	54.63	59.2
PGSC0003DMT400057433	Potato	mitochondrion	53.09	58.31
KRH46251	Soybean	mitochondrion	51.85	58.13
KRG98682	Soybean	mitochondrion	51.85	57.93
Solyc07g064930.2.1	Tomato	mitochondrion, plastid	53.09	57.53
CDY14299	Canola	mitochondrion	50.0	55.86
CDY17310	Canola	mitochondrion	49.69	55.14
KRH73804	Soybean	mitochondrion	58.33	54.78
Bra002925.1-P	Field mustard	mitochondrion	49.38	54.61
CDX97366	Canola	mitochondrion	47.84	54.39
HORVU5Hr1G053680.2	Barley	mitochondrion	50.31	54.15
Os09t0284400-01	Rice	mitochondrion	50.31	53.97
PGSC0003DMT400033475	Potato	mitochondrion	55.86	53.87
TraesCS5A01G176600.3	Wheat	mitochondrion	49.69	53.49
TraesCS5B01G173300.1	Wheat	mitochondrion	49.69	53.49
EER96498	Sorghum	mitochondrion	50.31	53.44
Bra010427.1-P	Field mustard	mitochondrion	51.54	53.35
CDX89303	Canola	mitochondrion	53.4	53.23
TraesCS5D01G180300.1	Wheat	mitochondrion	49.38	53.16
CDY19906	Canola	mitochondrion	47.53	52.74
Zm00001d005513_P001	Maize	mitochondrion	49.07	52.48
CDX92796	Canola	mitochondrion	51.54	52.02
Solyc12g014470.1.1	Tomato	mitochondrion	53.4	51.64
AT4G26780.1	Thale cress	mitochondrion	51.85	51.38
AT5G55200.1	Thale cress	mitochondrion	47.84	51.32
Bra026403.1-P	Field mustard	mitochondrion	44.14	50.89
Os08t0338700-01	Rice	mitochondrion	48.46	50.48
Zm00001d050123_P001	Maize	mitochondrion	51.54	50.3
KXG25038	Sorghum	plastid	53.09	47.91

Protein Annotations

EntrezGene:100252150	MapMan:19.1.3.3	Gene3D:2.30.22.10	Gene3D:3.90.20.20	EMBL:AM454689	ProteinID:CAN76715
ProteinID:CAN76715.1	ProteinID:CCB50695	ProteinID:CCB50695.1	ncoils:Coil	UniProt:F6HET3	EMBL:FN595751
GO:GO:0000166	GO:GO:0000774	GO:GO:0001405	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743
GO:GO:0006457	GO:GO:0006810	GO:GO:0006850	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016043	GO:GO:0030150	GO:GO:0030234	GO:GO:0042803	GO:GO:0050790	GO:GO:0051082
GO:GO:0051087	InterPro:GrpE	InterPro:GrpE_coiled_coil	InterPro:GrpE_head	InterPro:IPR009012	InterPro:IPR013805
HAMAP:MF_01151	PFAM:PF01025	PRINTS:PR00773	PANTHER:PTHR21237	PANTHER:PTHR21237:SF28	SUPFAM:SSF51064
SUPFAM:SSF58014	UniParc:UPI0001985641	ArrayExpress:VIT_19s0090g01190	EnsemblPlantsGene:VIT_19s0090g01190	EnsemblPlants:VIT_19s0090g01190.t01	unigene:Vvi.22505
RefSeq:XP_010644499.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr19:+:7236505..7240520

Molecular Weight (calculated)

35872.3 Da

IEP (calculated)

5.963

GRAVY (calculated)

-0.601

Length

324 amino acids

Sequence
(BLAST)

001: MFASRVLFRS TRTLLAQGRT SSLLAPQSHL NTFLIGESTD KVVATQVSLL HHLVHNASIF QRFGISSSAS PQTNEKETTQ SGNEQGTVEN DGAPADAEPA
101: KTNQAEESGS NSIPQSESVK RRRRGTKRTA FSDSDSEADL SMDDLMKLVL EKEELLKMKN KEIEKMQDKV LRSYAEMENV MERARREAEN SKKFAIQNFA
201: KSLLDVADNL GRASLVVKES FSKIDESKDT AGAVPLLKTL LEGVEMTEKQ LGEVFRKFGM EKFDPTNEQF DPHRHNAAFQ IPDPSKPSGT VAVVLKAGYM
301: LHDRVIRPAE VGVTQAVDNN ETEA

Best Arabidopsis Sequence Match ( AT4G26780.1 )
(BLAST)

001: MLVLRILSRV TRNAGIRSSL SAVTLPARNQ TPVFSSRFHS LAHDFSHKLV PAQMSMMDSF ALQRFNFSSS TSPESDEKKT HTEASKTSEE KPTAEANQPG
101: LDSESKDSVT DSAKRKRKGA KGAASSSSES DSESDDDELS ADDLVKLVAE KEELLSEKEE EIKQLKDKVL RTYAEMENVM DRTRRDAENT KKYAVQNFAK
201: SLLDVADNLG RASSVVKESF SKLDTSEDSA GAAPLLKTLL EGVEMTEKQL AEVFKKFGME KYDPINEPFD PNRHNAVFQV PDASKPEGTV AHVLKSGYTL
301: YDRVIRPAEV GVTQGGENQE EKKESDA

Arabidopsis Description

AR192GrpE protein homolog 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LB47]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.