Factsheet for GSMUA_Achr5P27100_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 8
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr3P24940_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26780.1	GSMUA_Achr10P...	AT4G15560.1	24104567
AT4G26780.1	GSMUA_Achr3P24940_001	AT4G15560.1	24104567
AT5G55200.1	GSMUA_AchrUn_...	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	44.15	81.48
CDY14299	Canola	mitochondrion	53.51	55.17
VIT_19s0090g01190.t01	Wine grape	mitochondrion	59.2	54.63
CDX97366	Canola	mitochondrion	51.84	54.39
Bra002925.1-P	Field mustard	mitochondrion	52.84	53.92
PGSC0003DMT400057433	Potato	mitochondrion	53.18	53.9
CDY19906	Canola	mitochondrion	51.84	53.08
KRG98682	Soybean	mitochondrion	51.17	52.76
KRH46251	Soybean	mitochondrion	50.84	52.6
CDY17310	Canola	mitochondrion	50.84	52.05
Solyc07g064930.2.1	Tomato	mitochondrion, plastid	51.84	51.84
Bra010427.1-P	Field mustard	mitochondrion	54.18	51.76
CDX92796	Canola	mitochondrion	54.85	51.09
AT4G26780.1	Thale cress	mitochondrion	55.52	50.76
AT5G55200.1	Thale cress	mitochondrion	50.5	50.0
CDX89303	Canola	mitochondrion	54.18	49.85
PGSC0003DMT400033475	Potato	mitochondrion	54.85	48.81
Bra026403.1-P	Field mustard	mitochondrion	44.82	47.69
Solyc12g014470.1.1	Tomato	mitochondrion	52.84	47.16
KRH73804	Soybean	mitochondrion	54.18	46.96

Protein Annotations

MapMan:19.1.3.3	Gene3D:2.30.22.10	Gene3D:3.90.20.20	ncoils:Coil	GO:GO:0000166	GO:GO:0000774
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987
GO:GO:0030234	GO:GO:0042803	GO:GO:0050790	GO:GO:0051087	EnsemblPlantsGene:GSMUA_Achr5G27100_001	EnsemblPlants:GSMUA_Achr5P27100_001
EnsemblPlants:GSMUA_Achr5T27100_001	InterPro:GrpE	InterPro:GrpE_coiled_coil	InterPro:GrpE_head	InterPro:IPR009012	InterPro:IPR013805
UniProt:M0T235	HAMAP:MF_01151	PFAM:PF01025	PRINTS:PR00773	ScanProsite:PS01071	PANTHER:PTHR21237
PANTHER:PTHR21237:SF28	SUPFAM:SSF51064	SUPFAM:SSF58014	UniParc:UPI0002965CE2	SEG:seg	:

Description

co-chaperone GrpE protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G27100_001]

Coordinates

chr5:+:27694266..27698957

Molecular Weight (calculated)

33170.1 Da

IEP (calculated)

6.537

GRAVY (calculated)

-0.548

Length

299 amino acids

Sequence
(BLAST)

001: MGSRVLSRAS RGGIARLFVS AYSRREPPVG GFHSLRESAA GSVIKYVPFQ RSQLLRQSIL TNTTLQRFGY SSSASPQPNQ SVDHDNDSEN TSEVGNRTDA
101: DEFSDEKPEL SFDELVKLVA EKEELLRLKH KEIEKMQDKV LRSYAEMENV MDRTKREAEN AKKFAIQNFA KSLLDVADNL GRASSVVKES FSKIDASKDT
201: VGAVPLLKTL LEGVEMTEKQ LSEVFRKFGV EKFDPINEQF DPHRHLAVFQ IPDASKPPAT VAAVLKSGYT LHDRVIRPAE VGVTQSLTNE PAEGSNGQA

Best Arabidopsis Sequence Match ( AT4G26780.1 )
(BLAST)

001: MLVLRILSRV TRNAGIRSSL SAVTLPARNQ TPVFSSRFHS LAHDFSHKLV PAQMSMMDSF ALQRFNFSSS TSPESDEKKT HTEASKTSEE KPTAEANQPG
101: LDSESKDSVT DSAKRKRKGA KGAASSSSES DSESDDDELS ADDLVKLVAE KEELLSEKEE EIKQLKDKVL RTYAEMENVM DRTRRDAENT KKYAVQNFAK
201: SLLDVADNLG RASSVVKESF SKLDTSEDSA GAAPLLKTLL EGVEMTEKQL AEVFKKFGME KYDPINEPFD PNRHNAVFQV PDASKPEGTV AHVLKSGYTL
301: YDRVIRPAEV GVTQGGENQE EKKESDA

Arabidopsis Description

AR192GrpE protein homolog 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LB47]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.