CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89402
CDX89404
CDX94426
CDX94429
CDY17034
CDY23649
CDY47592
CDY49480
CDY66007
CDY67628

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G55200.1	CDY17034	AT1G47260.1	21798944
AT5G55200.1	CDY23649	AT1G47260.1	21798944
AT5G55200.1	CDY47592	AT1G47260.1	21798944
AT5G55200.1	CDY67628	AT1G47260.1	21798944
AT5G55200.1	CDX89402	AT4G25660.1	21798944
AT5G55200.1	CDX89404	AT4G25660.1	21798944
AT5G55200.1	CDX94426	AT4G25660.1	21798944
AT5G55200.1	CDX94429	AT4G25660.1	21798944
AT5G55200.1	CDY49480	AT4G25660.1	21798944
AT5G55200.1	CDY66007	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002925.1-P	Field mustard	mitochondrion	95.55	95.22
CDY17310	Canola	mitochondrion	93.49	93.49
AT5G55200.1	Thale cress	mitochondrion	68.84	66.56
CDY14299	Canola	mitochondrion	60.27	60.69
CDX97366	Canola	mitochondrion	57.53	58.95
CDX92796	Canola	mitochondrion	61.3	55.76
CDX89303	Canola	mitochondrion	61.3	55.08
KRH46251	Soybean	mitochondrion	53.08	53.63
PGSC0003DMT400057433	Potato	mitochondrion	54.11	53.56
KRG98682	Soybean	mitochondrion	52.4	52.76
Solyc07g064930.2.1	Tomato	mitochondrion, plastid	53.42	52.17
GSMUA_Achr5P27100_001	Banana	mitochondrion	53.08	51.84
Zm00001d005513_P001	Maize	mitochondrion	51.03	49.17
EER96498	Sorghum	mitochondrion	50.68	48.52
VIT_19s0090g01190.t01	Wine grape	mitochondrion	52.74	47.53
HORVU5Hr1G053680.2	Barley	mitochondrion	48.97	47.51
TraesCS5A01G176600.3	Wheat	mitochondrion	48.29	46.84
TraesCS5B01G173300.1	Wheat	mitochondrion	48.29	46.84
TraesCS5D01G180300.1	Wheat	mitochondrion	47.95	46.51
Os09t0284400-01	Rice	mitochondrion	47.95	46.36
PGSC0003DMT400033475	Potato	mitochondrion	53.08	46.13
Solyc12g014470.1.1	Tomato	mitochondrion	52.05	45.37
Os08t0338700-01	Rice	mitochondrion	48.29	45.34
KRH73804	Soybean	mitochondrion	51.03	43.19
Zm00001d050123_P001	Maize	mitochondrion	47.95	42.17
KXG25038	Sorghum	plastid	47.95	39.0

Protein Annotations

MapMan:19.1.3.3	Gene3D:2.30.22.10	Gene3D:3.90.20.20	GO:A0A078G3H2	UniProt:A0A078G3H2	EnsemblPlants:CDY19906
ProteinID:CDY19906	ProteinID:CDY19906.1	ncoils:Coil	GO:GO:0000166	GO:GO:0000774	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005759	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0030234
GO:GO:0042803	GO:GO:0050790	GO:GO:0051087	EnsemblPlantsGene:GSBRNA2T00009694001	InterPro:GrpE	InterPro:GrpE_coiled_coil
InterPro:GrpE_head	InterPro:IPR009012	InterPro:IPR013805	HAMAP:MF_01151	PFAM:PF01025	PRINTS:PR00773
ScanProsite:PS01071	PANTHER:PTHR21237	PANTHER:PTHR21237:SF28	SUPFAM:SSF51064	SUPFAM:SSF58014	UniParc:UPI0004EDE622
SEG:seg	:	:	:	:	:

Description

BnaC09g31720DGrpE protein homolog [Source:UniProtKB/TrEMBL;Acc:A0A078G3H2]

Coordinates

chrLK032101:-:467654..469577

Molecular Weight (calculated)

32304.1 Da

IEP (calculated)

5.724

GRAVY (calculated)

-0.434

Length

292 amino acids

Sequence
(BLAST)

001: MLLTRVLSRV SRTSSLRSSL SSLSSPQRNQ ILPILSSQFH SFVHGTPNKL VAAPVSHLNH SSPDLNVFQR FAFFSSSSAE SKENVTSEAS EDVEPMKATT
101: DDFEGLSRDD LVKLVVEKED LVNVQQEEVK EMQDKVLRTY AEMENLMART KRNAENDKKF AIQKFATSLL DVADNLGRAS SVVKESFSKL DTSKDSAGAT
201: PLLKTLLEGV EMTEKQLAEV FKKSGLVKED PLNERFDPNR HNAVFQVPDA SKPEGTIAHV LKSGYSLFDR VIRPAEVGVT CSAVNQEKEA EA

Best Arabidopsis Sequence Match ( AT5G55200.1 )
(BLAST)

001: MLVSRVLSRV SRSAGLRSSF SSVVTPKRNQ IPIVASRFHS LVHGTPNKLV AVPVSLRNHG TLDLNVLQRF GFFSSSSAEP KGNESNTEVP KTGETSENVE
101: VGKATDAEID FDDLSRDDLV KLVSEKEDLL KVQQKDIMEM KDKFLRTYAE QQNLMDRTNR NAESAKKFAV QNFATSLLDV ADNLERASSV VKESFSKIDT
201: SKDLAGATPL LKNLLEGVEM TEKQLAEVFR KAGLVKEDPL NEPFNPNRHN AVFQVPDASK PKGTIAHVLK SGYSLYDRVI RPAEVGVTCA VENQEGGKES
301: AA

Arabidopsis Description

Mge1GrpE protein homolog 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FLP3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.