Factsheet for Bra002925.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010452.1-P
Bra013908.1-P
Bra013910.1-P
Bra014069.1-P
Bra032216.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G55200.1	Bra014069.1-P	AT1G47260.1	21798944
AT5G55200.1	Bra032216.1-P	AT1G47260.1	21798944
AT5G55200.1	Bra010452.1-P	AT4G25660.1	21798944
AT5G55200.1	Bra013908.1-P	AT4G25660.1	21798944
AT5G55200.1	Bra013910.1-P	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19906	Canola	mitochondrion	95.22	95.55
CDY17310	Canola	mitochondrion	93.86	94.18
AT5G55200.1	Thale cress	mitochondrion	70.31	68.21
PGSC0003DMT400057433	Potato	mitochondrion	55.97	55.59
Bra010427.1-P	Field mustard	mitochondrion	58.36	54.63
KRH46251	Soybean	mitochondrion	53.58	54.33
Solyc07g064930.2.1	Tomato	mitochondrion, plastid	55.29	54.18
KRG98682	Soybean	mitochondrion	52.9	53.45
GSMUA_Achr5P27100_001	Banana	mitochondrion	53.92	52.84
Bra026403.1-P	Field mustard	mitochondrion	49.15	51.25
Zm00001d005513_P001	Maize	mitochondrion	51.88	50.16
EER96498	Sorghum	mitochondrion	52.22	50.16
VIT_19s0090g01190.t01	Wine grape	mitochondrion	54.61	49.38
Os09t0284400-01	Rice	mitochondrion	49.49	48.01
PGSC0003DMT400033475	Potato	mitochondrion	54.61	47.62
HORVU5Hr1G053680.2	Barley	mitochondrion	48.81	47.51
TraesCS5A01G176600.3	Wheat	mitochondrion	48.46	47.18
TraesCS5B01G173300.1	Wheat	mitochondrion	48.46	47.18
TraesCS5D01G180300.1	Wheat	mitochondrion	48.12	46.84
Solyc12g014470.1.1	Tomato	mitochondrion	53.24	46.57
Os08t0338700-01	Rice	mitochondrion	49.15	46.3
KRH73804	Soybean	mitochondrion	52.22	44.35
Zm00001d050123_P001	Maize	mitochondrion	48.81	43.07
KXG25038	Sorghum	plastid	49.15	40.11

Protein Annotations

MapMan:19.1.3.3	Gene3D:2.30.22.10	Gene3D:3.90.20.20	EnsemblPlantsGene:Bra002925	EnsemblPlants:Bra002925.1	EnsemblPlants:Bra002925.1-P
ncoils:Coil	GO:GO:0000166	GO:GO:0000774	GO:GO:0003674	GO:GO:0005488	GO:GO:0005507
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005759	GO:GO:0006457	GO:GO:0008150	GO:GO:0009411	GO:GO:0009628
GO:GO:0009987	GO:GO:0030234	GO:GO:0042803	GO:GO:0050790	GO:GO:0051087	InterPro:GrpE
InterPro:GrpE_coiled_coil	InterPro:GrpE_head	InterPro:IPR009012	InterPro:IPR013805	UniProt:M4CFE3	HAMAP:MF_01151
PFAM:PF01025	PRINTS:PR00773	ScanProsite:PS01071	PANTHER:PTHR21237	PANTHER:PTHR21237:SF28	SUPFAM:SSF51064
SUPFAM:SSF58014	UniParc:UPI00025442A5	SEG:seg	:	:	:

Description

AT5G55200 (E=1e-099) | co-chaperone grpE protein, putative

Coordinates

chrA10:+:6713581..6715279

Molecular Weight (calculated)

32383.2 Da

IEP (calculated)

5.767

GRAVY (calculated)

-0.449

Length

293 amino acids

Sequence
(BLAST)

001: MLLTRVLSRV SRTSSLRSSL SSLSSPQRNQ ILPILSSQFH SFVHGTPNKL VAAPVSLLNH SSPDLNVFQR FGFFSSSSAE SKENETSQGS EDVESMKKAT
101: TDDFEGLSRD DLVKLVVEKE DLVNVQQEEV KEMQDKVLRT YAEMENLMAR TKRNAENDKK FAIQKFATSL LDVADNLGRA SSVVKESFSK IDTSKDSAGA
201: TPLLKTLLEG VEMTEKQLAE VFKKSGLVKE DPLNERFDPN RHNAVFQVPD ASKPEGTIAH VLKSGYSLFD RVIRPAEVGV TCAAVNQEKE AEA

Best Arabidopsis Sequence Match ( AT5G55200.1 )
(BLAST)

001: MLVSRVLSRV SRSAGLRSSF SSVVTPKRNQ IPIVASRFHS LVHGTPNKLV AVPVSLRNHG TLDLNVLQRF GFFSSSSAEP KGNESNTEVP KTGETSENVE
101: VGKATDAEID FDDLSRDDLV KLVSEKEDLL KVQQKDIMEM KDKFLRTYAE QQNLMDRTNR NAESAKKFAV QNFATSLLDV ADNLERASSV VKESFSKIDT
201: SKDLAGATPL LKNLLEGVEM TEKQLAEVFR KAGLVKEDPL NEPFNPNRHN AVFQVPDASK PKGTIAHVLK SGYSLYDRVI RPAEVGVTCA VENQEGGKES
301: AA

Arabidopsis Description

Mge1GrpE protein homolog 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FLP3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.