Factsheet for Os09t0284400-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 5
plastid 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	plastid
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

mitochondrion: 23257241

gfp PMID: 23257241 doi

L Xu, C Carrie, SR Law, MW Murcha, J Whelan

Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, Western Australia 6009, Australia.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os05t0408900-03
Os06t0107000-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26780.1	Os05t0408900-03	AT4G15560.1	24104567
AT5G55200.1	Os06t0107000-01	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	40.07	74.69
TraesCS5B01G173300.1	Wheat	mitochondrion	72.52	72.76
TraesCS5D01G180300.1	Wheat	mitochondrion	72.19	72.43
TraesCS5A01G176600.3	Wheat	mitochondrion	72.19	72.43
HORVU5Hr1G053680.2	Barley	mitochondrion	71.52	71.76
EER96498	Sorghum	mitochondrion	69.54	68.85
Zm00001d005513_P001	Maize	mitochondrion	68.87	68.65
Os08t0338700-01	Rice	mitochondrion	66.89	64.95
CDY14299	Canola	mitochondrion	50.99	53.1
CDX97366	Canola	mitochondrion	48.68	51.58
KRH46251	Soybean	mitochondrion	48.34	50.52
CDY17310	Canola	mitochondrion	48.68	50.34
VIT_19s0090g01190.t01	Wine grape	mitochondrion	53.97	50.31
KRG98682	Soybean	mitochondrion	48.01	50.0
Bra002925.1-P	Field mustard	mitochondrion	48.01	49.49
CDX92796	Canola	mitochondrion	52.32	49.22
Solyc07g064930.2.1	Tomato	mitochondrion, plastid	48.68	49.16
PGSC0003DMT400057433	Potato	mitochondrion	48.01	49.15
Bra010427.1-P	Field mustard	mitochondrion	50.0	48.24
CDY19906	Canola	mitochondrion	46.36	47.95
AT5G55200.1	Thale cress	mitochondrion	47.02	47.02
AT4G26780.1	Thale cress	mitochondrion	50.0	46.18
CDX89303	Canola	mitochondrion	49.01	45.54
PGSC0003DMT400033475	Potato	mitochondrion	50.0	44.94
Bra026403.1-P	Field mustard	mitochondrion	39.74	42.7
Solyc12g014470.1.1	Tomato	mitochondrion	47.35	42.69
KRH73804	Soybean	mitochondrion	48.34	42.32

Protein Annotations

MapMan:19.1.3.3	Gene3D:2.30.22.10	Gene3D:3.90.20.20	EntrezGene:4346621	EMBL:AK110658	ProteinID:BAD28716.1
ProteinID:BAD29356.1	ProteinID:BAF24690.1	ProteinID:BAT07257.1	ncoils:Coil	ProteinID:EAZ44065.1	GO:GO:0000166
GO:GO:0000774	GO:GO:0001405	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	GO:GO:0006457
GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0030150
GO:GO:0030234	GO:GO:0042803	GO:GO:0050790	GO:GO:0051082	GO:GO:0051087	InterPro:GrpE
InterPro:GrpE_coiled_coil	InterPro:GrpE_head	InterPro:IPR009012	InterPro:IPR013805	HAMAP:MF_01151	EnsemblPlantsGene:Os09g0284400
EnsemblPlants:Os09t0284400-01	PFAM:PF01025	PRINTS:PR00773	ScanProsite:PS01071	PANTHER:PTHR21237	PANTHER:PTHR21237:SF28
UniProt:Q6EPR4	SUPFAM:SSF51064	SUPFAM:SSF58014	UniParc:UPI00003CE7A7	RefSeq:XP_015612664.1	SEG:seg

Description

GrpE nucleotide exchange factor domain containing protein. (Os09t0284400-01)

Coordinates

chr9:-:6246356..6249737

Molecular Weight (calculated)

33096.0 Da

IEP (calculated)

5.344

GRAVY (calculated)

-0.483

Length

302 amino acids

Sequence
(BLAST)

001: MVAASRLLAR ASRQCVAAVA ASAARRRRCP AAALSLPVVT AAKAAAAEPW LGVPYMLNQP LRYSTTIFQR FGFSSTSPEL SDKEENQRKD QENSTNVSNE
101: GTEDVDLSKE DLVQLVLEKD GLLKSKDEEI NDMKDKVLRS YAEMENVIAR TKRESENSKK YAVQNFSKSL LDVADNLTRA SSVVKESFSK IDTSKDSTGA
201: VPLLKTLLEG VDMTDKQLGE VFKKFGVEKF DPLNEKFDPS RHCAIFQIPD PSKPSGTVAS VVKVGYMLHD RVLRPAEVGV TEGGPTTTEE AAENSEQKSS
301: EV

Best Arabidopsis Sequence Match ( AT4G26780.1 )
(BLAST)

001: MLVLRILSRV TRNAGIRSSL SAVTLPARNQ TPVFSSRFHS LAHDFSHKLV PAQMSMMDSF ALQRFNFSSS TSPESDEKKT HTEASKTSEE KPTAEANQPG
101: LDSESKDSVT DSAKRKRKGA KGAASSSSES DSESDDDELS ADDLVKLVAE KEELLSEKEE EIKQLKDKVL RTYAEMENVM DRTRRDAENT KKYAVQNFAK
201: SLLDVADNLG RASSVVKESF SKLDTSEDSA GAAPLLKTLL EGVEMTEKQL AEVFKKFGME KYDPINEPFD PNRHNAVFQV PDASKPEGTV AHVLKSGYTL
301: YDRVIRPAEV GVTQGGENQE EKKESDA

Arabidopsis Description

AR192GrpE protein homolog 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LB47]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.