Factsheet for Os05t0408900-03

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0711400-01
Os01t0859100-01
Os03t0162500-01
Os03t0796600-01
Os05t0408900-03
Os05t0444200-01
Os06t0611900-01
Os08t0338700-01
Os09t0284400-01
Os10t0417800-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G15560.1	Os01t0859100-01	AT1G08290.1	24104567
AT4G15560.1	Os05t0444200-01	AT1G08290.1	24104567
AT4G15560.1	Os01t0711400-01	AT2G26080.1	24104567
AT4G15560.1	Os06t0611900-01	AT2G26080.1	24104567
AT4G15560.1	Os03t0162500-01	AT3G22970.1	24104567
AT4G15560.1	Os03t0796600-01	AT3G22970.1	24104567
AT4G15560.1	Os10t0417800-01	AT3G22970.1	24104567
AT4G15560.1	Os05t0408900-03	AT4G15560.1	21798944
AT4G15560.1	Os08t0338700-01	AT4G26780.1	24104567
AT4G15560.1	Os09t0284400-01	AT4G26780.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	79.44	90.08
TraesCS1A01G255800.1	Wheat	plastid	89.03	90.03
TraesCS1D01G255100.1	Wheat	plastid	88.89	89.89
TraesCS1B01G266500.1	Wheat	plastid	88.89	89.89
EES19518	Sorghum	mitochondrion, plastid	88.75	88.5
HORVU1Hr1G060610.9	Barley	mitochondrion, plastid	87.22	86.5
Zm00001d038170_P001	Maize	plastid	89.31	85.96
Bra001832.1-P	Field mustard	peroxisome	72.92	84.95
KRH02173	Soybean	plastid	82.78	83.71
Solyc01g067890.2.1	Tomato	plastid	82.64	82.75
PGSC0003DMT400058821	Potato	plastid	82.36	82.48
VIT_05s0020g02130.t01	Wine grape	plastid	81.53	81.98
KRH20991	Soybean	plastid	82.08	81.97
KRH50940	Soybean	plastid	82.36	80.9
CDY64791	Canola	plastid	79.86	80.31
Bra033495.1-P	Field mustard	plastid	78.89	80.23
CDX90583	Canola	plastid	75.83	79.82
GSMUA_Achr3P24940_001	Banana	plastid	82.92	79.81
AT4G15560.1	Thale cress	plastid	79.31	79.64
Bra012779.1-P	Field mustard	plastid	75.56	79.53
CDY09752	Canola	plastid	79.31	79.53
CDY48893	Canola	plastid	78.19	78.63
CDY32433	Canola	plastid	77.92	78.35
KRH11287	Soybean	peroxisome, plastid	46.94	78.24
AT3G21500.3	Thale cress	plastid	71.39	75.92
CDY52177	Canola	plastid	76.25	74.9
Os07t0190000-01	Rice	plasma membrane, plastid	71.25	71.95
Os06t0142900-02	Rice	peroxisome, plastid	18.61	60.09
KRH16140	Soybean	mitochondrion, plastid	10.69	58.78

Protein Annotations

KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	Gene3D:3.40.50.920	Gene3D:3.40.50.970	EntrezGene:4338768	MapMan:9.1.2.2
ProteinID:AAT58851.1	ProteinID:AAV59446.1	EMBL:AF024512	EMBL:AK064944	EMBL:AK104851	EMBL:AK106750
ProteinID:BAF17438.1	ProteinID:BAS93978.1	ProteinID:BAS93980.1	InterPro:Dxylulose-5-P_synthase	ProteinID:EEE63700.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0008299	GO:GO:0008661	GO:GO:0009058
GO:GO:0009228	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0016114
GO:GO:0016740	GO:GO:0046872	GO:GO:0052865	InterPro:IPR009014	HAMAP:MF_00315	UniProt:O22567
EnsemblPlantsGene:Os05g0408900	EnsemblPlants:Os05t0408900-03	PFAM:PF02779	PFAM:PF02780	PFAM:PF13292	ScanProsite:PS00801
ScanProsite:PS00802	PANTHER:PTHR43322	PANTHER:PTHR43322:SF4	SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922
InterPro:THDP-binding	TIGRFAMs:TIGR00204	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_BS	InterPro:Transketolase_C
InterPro:Transketolase_N	UniParc:UPI00003B3413	RefSeq:XP_015640505.1	SEG:seg	:	:

Description

1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 1Similar to 1-deoxy-D-xylulose-5-phosphate synthase. (Os05t0408900-01);Similar to 1-deoxy-D-xylulose-5-phosphate synthase. (Os05t0408900-02);Similar to 1-D-deoxyxylulose 5-phosphate synthase. (Os05t0408900-03);Similar to 1-D-deoxyxylulose 5-phosphate synthase. (Os05t0408900-04)

Coordinates

chr5:-:19957171..19963042

Molecular Weight (calculated)

77308.6 Da

IEP (calculated)

7.406

GRAVY (calculated)

-0.104

Length

720 amino acids

Sequence
(BLAST)

001: MALTTFSISR GGFVGALPQE GHFAPAAAEL SLHKLQSRPH KARRRSSSSI SASLSTEREA AEYHSQRPPT PLLDTVNYPI HMKNLSLKEL QQLADELRSD
101: VIFHVSKTGG HLGSSLGVVE LTVALHYVFN TPQDKILWDV GHQSYPHKIL TGRRDKMPTM RQTNGLSGFT KRSESEYDSF GTGHSSTTIS AALGMAVGRD
201: LKGGKNNVVA VIGDGAMTAG QAYEAMNNAG YLDSDMIVIL NDNKQVSLPT ATLDGPAPPV GALSSALSKL QSSRPLRELR EVAKGVTKQI GGSVHELAAK
301: VDEYARGMIS GSGSTLFEEL GLYYIGPVDG HNIDDLITIL REVKSTKTTG PVLIHVVTEK GRGYPYAERA ADKYHGVAKF DPATGKQFKS PAKTLSYTNY
401: FAEALIAEAE QDNRVVAIHA AMGGGTGLNY FLRRFPNRCF DVGIAEQHAV TFAAGLACEG LKPFCAIYSS FLQRGYDQVV HDVDLQKLPV RFAMDRAGLV
501: GADGPTHCGA FDVTYMACLP NMVVMAPSDE AELCHMVATA AAIDDRPSCF RYPRGNGIGV PLPPNYKGVP LEVGKGRVLL EGERVALLGY GSAVQYCLAA
601: ASLVERHGLK VTVADARFCK PLDQTLIRRL ASSHEVLLTV EEGSIGGFGS HVAQFMALDG LLDGKLKWRP LVLPDRYIDH GSPADQLAEA GLTPSHIAAT
701: VFNVLGQARE ALAIMTVPNA

Best Arabidopsis Sequence Match ( AT4G15560.1 )
(BLAST)

001: MASSAFAFPS YIITKGGLST DSCKSTSLSS SRSLVTDLPS PCLKPNNNSH SNRRAKVCAS LAEKGEYYSN RPPTPLLDTI NYPIHMKNLS VKELKQLSDE
101: LRSDVIFNVS KTGGHLGSSL GVVELTVALH YIFNTPQDKI LWDVGHQSYP HKILTGRRGK MPTMRQTNGL SGFTKRGESE HDCFGTGHSS TTISAGLGMA
201: VGRDLKGKNN NVVAVIGDGA MTAGQAYEAM NNAGYLDSDM IVILNDNKQV SLPTATLDGP SPPVGALSSA LSRLQSNPAL RELREVAKGM TKQIGGPMHQ
301: LAAKVDEYAR GMISGTGSSL FEELGLYYIG PVDGHNIDDL VAILKEVKST RTTGPVLIHV VTEKGRGYPY AERADDKYHG VVKFDPATGR QFKTTNKTQS
401: YTTYFAEALV AEAEVDKDVV AIHAAMGGGT GLNLFQRRFP TRCFDVGIAE QHAVTFAAGL ACEGLKPFCA IYSSFMQRAY DQVVHDVDLQ KLPVRFAMDR
501: AGLVGADGPT HCGAFDVTFM ACLPNMIVMA PSDEADLFNM VATAVAIDDR PSCFRYPRGN GIGVALPPGN KGVPIEIGKG RILKEGERVA LLGYGSAVQS
601: CLGAAVMLEE RGLNVTVADA RFCKPLDRAL IRSLAKSHEV LITVEEGSIG GFGSHVVQFL ALDGLLDGKL KWRPMVLPDR YIDHGAPADQ LAEAGLMPSH
701: IAATALNLIG APREALF

Arabidopsis Description

DXSDXS1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5I0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.