Factsheet for VIT_05s0020g02130.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g01300.t01
VIT_05s0020g02130.t01
VIT_05s0020g04500.t01
VIT_06s0080g00270.t01
VIT_11s0016g02280.t01
VIT_19s0090g01190.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G15560.1	VIT_06s0080g00270.t01	AT1G08290.1	24104567
AT4G15560.1	VIT_04s0008g01300.t01	AT2G26080.1	24104567
AT4G15560.1	VIT_11s0016g02280.t01	AT2G26080.1	24104567
AT4G15560.1	VIT_05s0020g04500.t01	AT3G22970.1	24104567
AT4G15560.1	VIT_05s0020g02130.t01	AT4G15560.1	21798944
AT4G15560.1	VIT_19s0090g01190.t01	AT4G26780.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	79.47	89.61
PGSC0003DMT400058821	Potato	plastid	86.31	85.95
Solyc01g067890.2.1	Tomato	plastid	86.31	85.95
KRH20991	Soybean	plastid	86.45	85.85
Bra001832.1-P	Field mustard	peroxisome	73.6	85.28
KRH02173	Soybean	plastid	84.08	84.55
KRH50940	Soybean	plastid	85.47	83.49
AT4G15560.1	Thale cress	plastid	82.54	82.43
CDY64791	Canola	plastid	82.26	82.26
Bra033495.1-P	Field mustard	plastid	81.15	82.06
CDX90583	Canola	plastid	77.93	81.58
GSMUA_Achr3P24940_001	Banana	plastid	85.2	81.55
Os05t0408900-03	Rice	plastid	81.98	81.53
EES19518	Sorghum	mitochondrion, plastid	82.12	81.44
Bra012779.1-P	Field mustard	plastid	77.79	81.43
CDY09752	Canola	plastid	81.56	81.34
TraesCS1D01G255100.1	Wheat	plastid	80.73	81.18
TraesCS1A01G255800.1	Wheat	plastid	80.59	81.04
TraesCS1B01G266500.1	Wheat	plastid	80.45	80.9
KRH11287	Soybean	peroxisome, plastid	48.32	80.09
CDY48893	Canola	plastid	79.61	79.61
Zm00001d038170_P001	Maize	plastid	83.1	79.55
HORVU1Hr1G060610.9	Barley	mitochondrion, plastid	80.59	79.48
CDY32433	Canola	plastid	79.05	79.05
CDY52177	Canola	plastid	79.19	77.35
AT3G21500.3	Thale cress	plastid	72.21	76.37
VIT_09s0002g02050.t01	Wine grape	cytosol	11.59	69.17
VIT_11s0052g01780.t01	Wine grape	cytosol	66.48	68.99
VIT_00s0218g00110.t01	Wine grape	plastid	68.72	68.52
VIT_11s0052g01730.t01	Wine grape	plastid	67.88	66.12
VIT_11s0052g01240.t01	Wine grape	plastid	67.04	65.66
KRH16140	Soybean	mitochondrion, plastid	11.31	61.83
VIT_04s0008g04970.t01	Wine grape	plastid	56.28	56.05
VIT_02s0012g00960.t01	Wine grape	cytosol	16.34	30.63

Protein Annotations

KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	EntrezGene:100249323	wikigene:100249323	Gene3D:3.40.50.920	Gene3D:3.40.50.970
MapMan:9.1.2.2	ProteinID:CBI26134	ProteinID:CBI26134.3	UniProt:D7T6L3	InterPro:Dxylulose-5-P_synthase	EMBL:FN595749
GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0008661
GO:GO:0009058	GO:GO:0009987	GO:GO:0016114	GO:GO:0016740	InterPro:IPR009014	EntrezGene:LOC100249323
wikigene:LOC100249323	HAMAP:MF_00315	PFAM:PF02779	PFAM:PF02780	PFAM:PF13292	ScanProsite:PS00801
ScanProsite:PS00802	PANTHER:PTHR43322	PANTHER:PTHR43322:SF4	SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922
TIGR:TC56417	InterPro:THDP-binding	TIGRFAMs:TIGR00204	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_BS
InterPro:Transketolase_C	InterPro:Transketolase_N	UniParc:UPI00019832F2	ArrayExpress:VIT_05s0020g02130	EnsemblPlantsGene:VIT_05s0020g02130	EnsemblPlants:VIT_05s0020g02130.t01
unigene:Vvi.4774	RefSeq:XP_002277919	RefSeq:XP_002277919.1	:	:	:

Description

No Description!

Coordinates

chr5:-:3851143..3856263

Molecular Weight (calculated)

77095.6 Da

IEP (calculated)

6.837

GRAVY (calculated)

-0.078

Length

716 amino acids

Sequence
(BLAST)

001: MALCTLSFPA HFSQAAASNP QRLTPQCSHL FLGVDLQCQS QQRSKARKRP NGVCASLSDR EEYHSQRPPT PLLDTINYPI HMKNLSVKEL KQLADELRSD
101: VVFNVSKTGG HLGSSLGVVE LTVALHYVFN APQDRILWDV GHQSYPHKIL TGRRDQMHTM RQTDGLAGFT KRSESEYDCF GTGHSSTTIS AGLGMAVGRD
201: LKGKNNNVIA VIGDGAMTAG QAYEAMNNAG YLDSDMIVIL NDNKQVSLPT ATLDGPIPPV GALSSALSRL QSNRPLRELR EVAKGVTKQI GGPMHELAAK
301: VDEYARGMIS GSGSTLFEEL GLYYIGPVDG HNIDDLVAIL KEVKSTKTTG PVLIHVVTEK GRGYPYAEKA ADKYHGVTKF DPATGKQFKS SAPTQSYTTY
401: FAEALIAEAE VDKDIVAIHA AMGGGTGLNL FHRRFPTRCF DVGIAEQHAV TFAAGLACEG IKPFCAIYSS FMQRAYDQVV HDVDLQKLPV KFAMDRAGLV
501: GADGPTHCGA FDVTFMACLP NMVVMAPADE AELFHMVATA AAIDDRPSCF RYPRGNGVGV ELPPGNKGIP IEVGRGRILI EGERVALLGY GTAVQSCLVA
601: SSLLEQHGLR ITVADARFCK PLDHALIRSL AKSHEVLITV EEGSIGGFGS HVAQFLALNG LLDGTTKWSP MVLPDRYIDH GAPADQLAMA GLTPSHIAAT
701: VFNILGQTRE ALEIML

Best Arabidopsis Sequence Match ( AT4G15560.1 )
(BLAST)

001: MASSAFAFPS YIITKGGLST DSCKSTSLSS SRSLVTDLPS PCLKPNNNSH SNRRAKVCAS LAEKGEYYSN RPPTPLLDTI NYPIHMKNLS VKELKQLSDE
101: LRSDVIFNVS KTGGHLGSSL GVVELTVALH YIFNTPQDKI LWDVGHQSYP HKILTGRRGK MPTMRQTNGL SGFTKRGESE HDCFGTGHSS TTISAGLGMA
201: VGRDLKGKNN NVVAVIGDGA MTAGQAYEAM NNAGYLDSDM IVILNDNKQV SLPTATLDGP SPPVGALSSA LSRLQSNPAL RELREVAKGM TKQIGGPMHQ
301: LAAKVDEYAR GMISGTGSSL FEELGLYYIG PVDGHNIDDL VAILKEVKST RTTGPVLIHV VTEKGRGYPY AERADDKYHG VVKFDPATGR QFKTTNKTQS
401: YTTYFAEALV AEAEVDKDVV AIHAAMGGGT GLNLFQRRFP TRCFDVGIAE QHAVTFAAGL ACEGLKPFCA IYSSFMQRAY DQVVHDVDLQ KLPVRFAMDR
501: AGLVGADGPT HCGAFDVTFM ACLPNMIVMA PSDEADLFNM VATAVAIDDR PSCFRYPRGN GIGVALPPGN KGVPIEIGKG RILKEGERVA LLGYGSAVQS
601: CLGAAVMLEE RGLNVTVADA RFCKPLDRAL IRSLAKSHEV LITVEEGSIG GFGSHVVQFL ALDGLLDGKL KWRPMVLPDR YIDHGAPADQ LAEAGLMPSH
701: IAATALNLIG APREALF

Arabidopsis Description

DXSDXS1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5I0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.