Factsheet for VIT_05s0020g04500.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g02130.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22970.1	VIT_05s0020g02130.t01	AT4G15560.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34359	Soybean	plastid	66.06	65.89
KRG92439	Soybean	plastid	64.51	63.36
PGSC0003DMT400041951	Potato	cytosol	60.36	62.97
CDY16266	Canola	nucleus	57.77	62.47
Bra036877.1-P	Field mustard	cytosol, plastid	56.74	61.86
CDY29750	Canola	nucleus, plastid	56.48	61.58
Bra001897.1-P	Field mustard	cytosol	52.85	61.26
CDX92970	Canola	cytosol	52.59	60.96
AT3G22970.1	Thale cress	plastid	58.29	60.81
Bra033896.1-P	Field mustard	cytosol	57.51	60.49
PGSC0003DMT400015576	Potato	cytosol, plastid	61.92	60.35
Solyc09g082980.2.1	Tomato	nucleus	62.18	60.3
CDX94877	Canola	cytosol	54.15	60.23
KRH69065	Soybean	cytosol	56.74	59.84
Solyc06g053910.2.1	Tomato	cytosol, plastid	59.84	59.38
CDY10330	Canola	cytosol	55.96	59.02
VIT_00s0179g00360.t01	Wine grape	cytosol	60.36	58.69
AT4G14620.1	Thale cress	cytosol	51.81	58.65
KRH31637	Soybean	cytosol	58.03	58.49
GSMUA_Achr3P15230_001	Banana	cytosol	49.48	56.68
CDY10329	Canola	plastid	53.37	54.5
GSMUA_Achr8P26930_001	Banana	cytosol	49.22	53.82
GSMUA_Achr4P21100_001	Banana	cytosol, plastid	50.0	53.76
GSMUA_Achr8P20590_001	Banana	plastid	47.15	50.14
GSMUA_Achr8P04470_001	Banana	cytosol	47.67	50.0
GSMUA_Achr9P10660_001	Banana	cytosol, plastid	47.93	48.43
GSMUA_Achr4P14880_001	Banana	mitochondrion	32.9	48.11
GSMUA_Achr9P25590_001	Banana	plastid	47.15	44.72
EER91615	Sorghum	mitochondrion	33.68	44.37
Zm00001d032955_P001	Maize	cytosol, mitochondrion, nucleus, plastid	34.46	44.33
EER95459	Sorghum	plastid	33.94	43.81
TraesCS5B01G442200.1	Wheat	plastid	42.23	43.47
TraesCS5A01G439200.1	Wheat	plastid	42.23	43.47
TraesCS5D01G446400.1	Wheat	plastid	42.75	43.31
Os10t0417800-01	Rice	plastid	33.68	43.19
Os03t0162500-01	Rice	plastid	34.2	43.0
TraesCS4B01G278500.1	Wheat	peroxisome, plastid	34.46	42.77
TraesCS4D01G277000.1	Wheat	peroxisome, plastid	34.46	42.77
TraesCS4A01G025500.1	Wheat	peroxisome, plastid	34.72	42.54
Zm00001d027763_P001	Maize	plastid	32.9	42.33
HORVU4Hr1G073730.1	Barley	peroxisome, plastid	34.46	42.22
Zm00001d018962_P001	Maize	mitochondrion, plastid	41.45	41.78
EER93295	Sorghum	plastid	42.49	41.73
Os03t0796600-01	Rice	cytosol, nucleus, plastid	43.26	41.23
HORVU5Hr1G105950.2	Barley	plastid	42.75	40.54
Zm00001d034444_P002	Maize	plastid	42.49	40.49
Zm00001d007820_P002	Maize	plastid	39.64	38.15
EER98072	Sorghum	cytosol, plastid	40.93	33.33
VIT_13s0019g01100.t01	Wine grape	nucleus	21.24	30.15
VIT_00s0337g00040.t01	Wine grape	cytosol	21.24	29.08
VIT_04s0044g00970.t01	Wine grape	cytosol	20.21	28.78
VIT_18s0001g15610.t01	Wine grape	cytosol	20.47	28.62
VIT_00s0265g00090.t01	Wine grape	mitochondrion	21.76	27.18
VIT_12s0059g01640.t01	Wine grape	nucleus	20.21	25.91
VIT_18s0001g06070.t01	Wine grape	nucleus	16.84	24.25
VIT_12s0028g03560.t01	Wine grape	cytosol	18.65	23.76

Protein Annotations

EntrezGene:100251040	wikigene:100251040	MapMan:35.2	ProteinID:CCB50484	ProteinID:CCB50484.1	UniProt:F6HDW3
EMBL:FN595749	EntrezGene:LOC100251040	wikigene:LOC100251040	InterPro:PDDEXK-like	PFAM:PF04720	PANTHER:PTHR31579
PANTHER:PTHR31579:SF19	TIGRFAMs:TIGR01615	UniParc:UPI000198355A	ArrayExpress:VIT_05s0020g04500	EnsemblPlantsGene:VIT_05s0020g04500	EnsemblPlants:VIT_05s0020g04500.t01
unigene:Vvi.12286	RefSeq:XP_002283882	RefSeq:XP_002283882.1	RefSeq:XP_003632000	RefSeq:XP_003632000.1	RefSeq:XP_010649979.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5:+:6312953..6314442

Molecular Weight (calculated)

42811.7 Da

IEP (calculated)

5.617

GRAVY (calculated)

-0.555

Length

386 amino acids

Sequence
(BLAST)

001: MPFPMKIQPI DIDSHTPRET IRADSGKPVL KSRLKRLFDR QFHGVLKNSS TEKPESQYSK DGGVEFEPSS VCLAKMVQNF IEESNEKQTT VKCGRNRCNC
101: FNGNGNDSSD DEFDGYGGFG EPIVTASSGD ASDLLKGLIP CASVAERNLL ADTAKIVEKN KIKPKDDLTT IVMDGLSALG YDASICKSRW EKSPSYPAGE
201: YEFIDVIVDG ERLLIDIDFR SEFEIARSTG VYKAILQSLP YIFVGKPDRL QQIVSIVSEA AKQSLKKKGM HFPPWRKSEY MRAKWLSPYT RTTPNGILKE
301: SENKSEQDSA TTESECGEFE LIFGEESTPQ ERDHECTASS PAKFSGEGEK IILVVSPWQP PAIKPKSCER GAKVVTGLAS LLKEKP

Best Arabidopsis Sequence Match ( AT3G22970.1 )
(BLAST)

001: MPFTMKIQPI DIDSSPTVAR AESGNKPVLK SRLKRLFDRP FTNVLRNSTT TTTEKPFVVT GGEVQCGGVV TEFEPSSVCL AKMVQNFIEE NNEKQAKCGR
101: NRCNCFNGNN DGSSDDESDL FGGSIDGCDA SDHLKSLIPC TTVGERNLLA DAAKIVDKNK SVKRKDDMKK IVNEGLLSLN YNSSICKSKW DKSPSFPAGE
201: YEYIDVIIGE ERLIIDVDFR SEFDIARQTS GYKVLLQSLP FIFVGKSDRL SQIVFLISEA AKQSLKKKGM PFPPWRKAEY MRSKWLSSYT RASVVVVDET
301: VTVTDVTAAD AAVEKEVDSV EIELVFEEKC LSPRVIVNSS SSPTDGDDDV AVEREVKAVT GLASLFKEKP

Arabidopsis Description

At3g22970 [Source:UniProtKB/TrEMBL;Acc:Q9LIJ8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.