Factsheet for VIT_00s0179g00360.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH71351	Soybean	cytosol	57.18	63.23
KRH32089	Soybean	cytosol	52.9	61.95
CDX93300	Canola	cytosol	46.1	61.0
VIT_05s0020g04500.t01	Wine grape	nucleus	58.69	60.36
AT2G38820.2	Thale cress	cytosol	47.1	60.32
Bra017099.1-P	Field mustard	cytosol	45.34	60.0
CDY18366	Canola	cytosol	45.34	60.0
Bra000098.1-P	Field mustard	cytosol	45.84	58.9
CDY14428	Canola	cytosol	45.59	58.2
CDY07696	Canola	cytosol	45.59	58.01
KRG95606	Soybean	cytosol	51.89	57.06
GSMUA_Achr3P15230_001	Banana	cytosol	47.86	56.38
GSMUA_Achr8P26930_001	Banana	cytosol	46.35	52.12
GSMUA_Achr4P21100_001	Banana	cytosol, plastid	46.85	51.81
GSMUA_Achr4P14880_001	Banana	mitochondrion	33.5	50.38
GSMUA_Achr8P04470_001	Banana	cytosol	46.1	49.73
GSMUA_Achr8P20590_001	Banana	plastid	44.84	49.04
PGSC0003DMT400049773	Potato	nucleus	52.9	48.39
AT3G54550.1	Thale cress	plastid	35.01	48.26
Solyc09g065760.2.1	Tomato	cytosol, plastid	52.64	48.05
GSMUA_Achr9P10660_001	Banana	cytosol, plastid	45.84	47.64
GSMUA_Achr9P25590_001	Banana	plastid	45.84	44.72
TraesCS4D01G277000.1	Wheat	peroxisome, plastid	35.01	44.69
TraesCS4B01G278500.1	Wheat	peroxisome, plastid	34.76	44.37
Os03t0162500-01	Rice	plastid	34.26	44.3
EER95459	Sorghum	plastid	33.25	44.15
TraesCS4A01G025500.1	Wheat	peroxisome, plastid	35.01	44.13
HORVU4Hr1G073730.1	Barley	peroxisome, plastid	34.51	43.49
EER91615	Sorghum	mitochondrion	31.99	43.34
Zm00001d032955_P001	Maize	cytosol, mitochondrion, nucleus, plastid	32.75	43.33
Os10t0417800-01	Rice	plastid	32.24	42.52
Zm00001d027763_P001	Maize	plastid	31.99	42.33
TraesCS5A01G439200.1	Wheat	plastid	39.04	41.33
TraesCS5B01G442200.1	Wheat	plastid	38.79	41.07
TraesCS5D01G446400.1	Wheat	plastid	39.04	40.68
Os03t0796600-01	Rice	cytosol, nucleus, plastid	39.55	38.77
EER93295	Sorghum	plastid	38.29	38.68
Zm00001d018962_P001	Maize	mitochondrion, plastid	36.78	38.12
Zm00001d034444_P002	Maize	plastid	37.78	37.04
HORVU5Hr1G105950.2	Barley	plastid	37.78	36.85
Zm00001d007820_P002	Maize	plastid	36.02	35.66
EER98072	Sorghum	cytosol, plastid	37.28	31.22
VIT_00s0337g00040.t01	Wine grape	cytosol	20.91	29.43
VIT_13s0019g01100.t01	Wine grape	nucleus	19.9	29.04
VIT_18s0001g15610.t01	Wine grape	cytosol	20.15	28.99
VIT_04s0044g00970.t01	Wine grape	cytosol	18.64	27.31
VIT_12s0059g01640.t01	Wine grape	nucleus	18.89	24.92
VIT_00s0265g00090.t01	Wine grape	mitochondrion	19.14	24.6
VIT_12s0028g03560.t01	Wine grape	cytosol	18.14	23.76
VIT_18s0001g06070.t01	Wine grape	nucleus	15.87	23.51

Protein Annotations

ArrayExpress:VIT_00s0179g00360	EMBL:FN595511	EnsemblPlants:VIT_00s0179g00360.t01	EnsemblPlantsGene:VIT_00s0179g00360	EntrezGene:100245954	EntrezGene:LOC100245954
InterPro:PDDEXK-like	PANTHER:PTHR31579	PANTHER:PTHR31579:SF5	PFAM:PF04720	ProteinID:CBI25063	ProteinID:CBI25063.3
RefSeq:XP_002280916	RefSeq:XP_002280916.1	SEG:seg	TIGRFAMs:TIGR01615	unigene:Vvi.12134	UniParc:UPI0001BE2501
UniProt:D7T3I2	wikigene:100245954	wikigene:LOC100245954	MapMan:35.2	:	:

Description

No Description!

Coordinates

chrUn:+:7600487..7602393

Molecular Weight (calculated)

44645.0 Da

IEP (calculated)

7.296

GRAVY (calculated)

-0.530

Length

397 amino acids

Sequence
(BLAST)

001: MPFPMKIQPI DSYTHEESLR CETVKPVVKS RLKRLLERQF PSVLRINAVE KTSVEESHFS KDGISTEFEP SSVCLAKMVQ NFIEESNEKQ LPPVRCGRNR
101: CNCFNGNCTD ISEDEFDFYG GGFGDSTLTS SGEACEILKS LVPCASIRER NLLADTAKIV EKNKICKRKD DFCRKLVTDG LLALGYDASV CKSRWEKSSS
201: YPAGEYEYID VIVEGERLLI DIDFRSEFEI ARSTKSYKAI LQTLPHIFVG KPDRLQKIIS IVSEASRQSL KKKGMHFPPW RKAEYVKSKW LSPYTRTTPT
301: SILTPTNNSE THPKSDKNQA LIPTKSSSGE LDIIFREDNS GPDDSMFVLS ESSVEEEKTE NTAAAKQWNP PEIKPKKSLQ IAGNIVTGFA SVIRDGP

Best Arabidopsis Sequence Match ( AT3G22970.1 )
(BLAST)

001: MPFTMKIQPI DIDSSPTVAR AESGNKPVLK SRLKRLFDRP FTNVLRNSTT TTTEKPFVVT GGEVQCGGVV TEFEPSSVCL AKMVQNFIEE NNEKQAKCGR
101: NRCNCFNGNN DGSSDDESDL FGGSIDGCDA SDHLKSLIPC TTVGERNLLA DAAKIVDKNK SVKRKDDMKK IVNEGLLSLN YNSSICKSKW DKSPSFPAGE
201: YEYIDVIIGE ERLIIDVDFR SEFDIARQTS GYKVLLQSLP FIFVGKSDRL SQIVFLISEA AKQSLKKKGM PFPPWRKAEY MRSKWLSSYT RASVVVVDET
301: VTVTDVTAAD AAVEKEVDSV EIELVFEEKC LSPRVIVNSS SSPTDGDDDV AVEREVKAVT GLASLFKEKP

Arabidopsis Description

At3g22970 [Source:UniProtKB/TrEMBL;Acc:Q9LIJ8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.