Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G38820.2 | Thale cress | cytosol | 48.96 | 45.48 |
| GSMUA_Achr3P15230_001 | Banana | cytosol | 44.79 | 38.28 |
| KRH71351 | Soybean | cytosol | 46.53 | 37.33 |
| GSMUA_Achr4P14880_001 | Banana | mitochondrion | 34.03 | 37.12 |
| KRH32089 | Soybean | cytosol | 43.4 | 36.87 |
| GSMUA_Achr4P21100_001 | Banana | cytosol, plastid | 45.14 | 36.21 |
| KRG95606 | Soybean | cytosol | 45.14 | 36.01 |
| GSMUA_Achr8P20590_001 | Banana | plastid | 44.44 | 35.26 |
| Os10t0417800-01 | Rice | plastid | 36.81 | 35.22 |
| VIT_00s0179g00360.t01 | Wine grape | cytosol | 48.26 | 35.01 |
| AT4G14620.1 | Thale cress | cytosol | 40.97 | 34.6 |
| EER91615 | Sorghum | mitochondrion | 35.07 | 34.47 |
| AT3G22970.1 | Thale cress | plastid | 43.75 | 34.05 |
| GSMUA_Achr8P04470_001 | Banana | cytosol | 43.4 | 33.97 |
| EER95459 | Sorghum | plastid | 35.07 | 33.78 |
| GSMUA_Achr8P26930_001 | Banana | cytosol | 41.32 | 33.71 |
| Os03t0162500-01 | Rice | plastid | 35.76 | 33.55 |
| Zm00001d027763_P001 | Maize | plastid | 34.72 | 33.33 |
| Zm00001d032955_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 34.38 | 33.0 |
| TraesCS4D01G277000.1 | Wheat | peroxisome, plastid | 34.38 | 31.83 |
| TraesCS4B01G278500.1 | Wheat | peroxisome, plastid | 34.38 | 31.83 |
| TraesCS4A01G025500.1 | Wheat | peroxisome, plastid | 34.72 | 31.75 |
| HORVU4Hr1G073730.1 | Barley | peroxisome, plastid | 34.72 | 31.75 |
| GSMUA_Achr9P25590_001 | Banana | plastid | 44.1 | 31.2 |
| TraesCS5B01G442200.1 | Wheat | plastid | 40.28 | 30.93 |
| TraesCS5A01G439200.1 | Wheat | plastid | 40.28 | 30.93 |
| GSMUA_Achr9P10660_001 | Banana | cytosol, plastid | 40.62 | 30.63 |
| TraesCS5D01G446400.1 | Wheat | plastid | 39.93 | 30.18 |
| PGSC0003DMT400049773 | Potato | nucleus | 44.79 | 29.72 |
| Solyc09g065760.2.1 | Tomato | cytosol, plastid | 44.44 | 29.43 |
| HORVU5Hr1G105950.2 | Barley | plastid | 38.89 | 27.52 |
| Os03t0796600-01 | Rice | cytosol, nucleus, plastid | 38.54 | 27.41 |
| Zm00001d018962_P001 | Maize | mitochondrion, plastid | 36.11 | 27.15 |
| AT3G25240.1 | Thale cress | cytosol | 26.39 | 27.05 |
| AT3G07350.1 | Thale cress | nucleus | 27.78 | 26.85 |
| Zm00001d007820_P002 | Maize | plastid | 35.42 | 25.44 |
| AT1G77145.1 | Thale cress | cytosol | 22.57 | 25.0 |
| EER93295 | Sorghum | plastid | 34.03 | 24.94 |
| AT1G62420.1 | Thale cress | cytosol | 23.96 | 24.38 |
| AT2G39650.1 | Thale cress | cytosol | 24.31 | 24.05 |
| Zm00001d034444_P002 | Maize | plastid | 33.68 | 23.95 |
| AT1G77160.1 | Thale cress | cytosol | 20.83 | 22.81 |
| AT1G12030.1 | Thale cress | mitochondrion | 22.22 | 21.69 |
| EER98072 | Sorghum | cytosol, plastid | 35.07 | 21.31 |
| AT4G32480.1 | Thale cress | nucleus | 20.14 | 20.21 |
| AT2G20670.1 | Thale cress | nucleus | 19.79 | 19.39 |
Protein Annotations
| MapMan:35.2 | EntrezGene:824620 | ProteinID:AEE79249.1 | ArrayExpress:AT3G54550 | EnsemblPlantsGene:AT3G54550 | RefSeq:AT3G54550 |
| TAIR:AT3G54550 | RefSeq:AT3G54550-TAIR-G | EnsemblPlants:AT3G54550.1 | TAIR:AT3G54550.1 | Unigene:At.53932 | ProteinID:CAB77575.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0032774 | RefSeq:NP_191018.1 | InterPro:PDDEXK-like |
| PFAM:PF04720 | PANTHER:PTHR31579 | PANTHER:PTHR31579:SF5 | UniProt:Q9M1H2 | TIGRFAMs:TIGR01615 | UniParc:UPI00000A1E9D |
| SEG:seg | : | : | : | : | : |
Description
DNA-directed RNA polymerase subunit beta-beta protein, putative (DUF506) [Source:UniProtKB/TrEMBL;Acc:Q9M1H2]
Coordinates
chr3:-:20193627..20194663
Molecular Weight (calculated)
32788.8 Da
IEP (calculated)
8.635
GRAVY (calculated)
-0.603
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MPFRSKVQPI NINGVGMRQA PRSRLKRLFE RPFSLKNLAG VDSSLSRENS EEIEPSSVCL RRMVQNYIED PDSEKQSKCI VRNRCNCFSG SGTDSSDEDD
101: EESSSSRRVL RSLKSLLLCA NVSERDLETK TTEIVEREVE DKSRLKNVVD ELVALGYDAA ICKSRWEKSK TKSYCVPAGD YEYLDVNIGG ERVLIDFDFQ
201: SKFEIARSSE TYESISKTLP YVFVGQVDRL TKVVVFLSKA AKTSFRKKGL FMPPWRRAEY LLTKWVSQYD RTKQTQGETS GQAGVVHP
101: EESSSSRRVL RSLKSLLLCA NVSERDLETK TTEIVEREVE DKSRLKNVVD ELVALGYDAA ICKSRWEKSK TKSYCVPAGD YEYLDVNIGG ERVLIDFDFQ
201: SKFEIARSSE TYESISKTLP YVFVGQVDRL TKVVVFLSKA AKTSFRKKGL FMPPWRRAEY LLTKWVSQYD RTKQTQGETS GQAGVVHP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.