CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES19518

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22970.1	EES19518	AT4G15560.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027763_P001	Maize	plastid	92.64	92.33
Os03t0162500-01	Rice	plastid	82.94	80.78
TraesCS4D01G277000.1	Wheat	peroxisome, plastid	82.27	79.1
TraesCS4B01G278500.1	Wheat	peroxisome, plastid	82.27	79.1
HORVU4Hr1G073730.1	Barley	peroxisome, plastid	83.28	79.05
TraesCS4A01G025500.1	Wheat	peroxisome, plastid	82.27	78.1
EER91615	Sorghum	mitochondrion	72.24	73.72
GSMUA_Achr4P21100_001	Banana	cytosol, plastid	51.51	42.9
GSMUA_Achr8P20590_001	Banana	plastid	51.84	42.7
GSMUA_Achr9P10660_001	Banana	cytosol, plastid	54.18	42.41
KRG95606	Soybean	cytosol	44.48	36.84
GSMUA_Achr9P25590_001	Banana	plastid	49.83	36.61
Bra000098.1-P	Field mustard	cytosol	37.79	36.57
CDY07696	Canola	cytosol	38.13	36.54
AT2G38820.2	Thale cress	cytosol	37.79	36.45
CDY14428	Canola	cytosol	37.79	36.33
KRH71351	Soybean	cytosol	43.48	36.21
CDX93300	Canola	cytosol	36.12	36.0
CDY18366	Canola	cytosol	35.45	35.33
Bra017099.1-P	Field mustard	cytosol	35.45	35.33
Bra036877.1-P	Field mustard	cytosol, plastid	41.81	35.31
CDX92970	Canola	cytosol	39.13	35.14
Bra001897.1-P	Field mustard	cytosol	39.13	35.14
KRH32089	Soybean	cytosol	39.8	35.1
AT3G54550.1	Thale cress	plastid	33.78	35.07
CDY29750	Canola	nucleus, plastid	41.47	35.03
EER93295	Sorghum	plastid	45.48	34.61
Bra033896.1-P	Field mustard	cytosol	42.14	34.33
VIT_05s0020g04500.t01	Wine grape	nucleus	43.81	33.94
CDY16266	Canola	nucleus	40.47	33.89
VIT_00s0179g00360.t01	Wine grape	cytosol	44.15	33.25
KRH34359	Soybean	plastid	42.81	33.07
PGSC0003DMT400041951	Potato	cytosol	40.8	32.97
CDX94877	Canola	cytosol	38.13	32.85
KRG92439	Soybean	plastid	43.14	32.82
CDY10330	Canola	cytosol	39.8	32.51
KRH69065	Soybean	cytosol	39.13	31.97
PGSC0003DMT400015576	Potato	cytosol, plastid	42.14	31.82
CDY10329	Canola	plastid	39.8	31.48
Solyc09g082980.2.1	Tomato	nucleus	41.81	31.41
KRH31637	Soybean	cytosol	40.13	31.33
AT3G22970.1	Thale cress	plastid	38.46	31.08
AT4G14620.1	Thale cress	cytosol	35.12	30.79
Solyc06g053910.2.1	Tomato	cytosol, plastid	39.8	30.59
EES04096	Sorghum	cytosol	30.1	30.41
EER98072	Sorghum	cytosol, plastid	48.16	30.38
EES01469	Sorghum	nucleus	27.09	28.72
PGSC0003DMT400049773	Potato	nucleus	39.46	27.19
Solyc09g065760.2.1	Tomato	cytosol, plastid	38.46	26.44
EES19824	Sorghum	cytosol	26.09	25.91
EES07354	Sorghum	cytosol	23.75	22.98
OQU87982	Sorghum	cytosol	20.74	22.06

Protein Annotations

EnsemblPlants:EER95459	EnsemblPlantsGene:SORBI_3001G495600	EntrezGene:8059848	InterPro:PDDEXK-like	PANTHER:PTHR31579	PANTHER:PTHR31579:SF16
PFAM:PF04720	ProteinID:EER95459	ProteinID:EER95459.1	RefSeq:XP_002468461.1	SEG:seg	TIGRFAMs:TIGR01615
unigene:Sbi.11739	UniParc:UPI0001A82F81	UniProt:C5WWX4	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr1:-:76517358..76520284

Molecular Weight (calculated)

32063.0 Da

IEP (calculated)

7.857

GRAVY (calculated)

-0.400

Length

299 amino acids

Sequence
(BLAST)

001: MRAAQIDPSL AAPPKSRLKR LFERQVLRVS PAERLPSAPP GGGEKQDEVS EPSSLCLDGM VRSFLEDGGG AAERGAAARC CNCFHAGDTS DDEDGPAAAD
101: AAAADIAETI KGLVHCASLR ERNLLADVST LVERHRASGA RKRDLLRLLA ESLRAAGHDA AVCLSRWDKS ASHPAGEHAY LDVLLPAASE RGERERVLVD
201: VDFRSAFEVA RPTKAYRAVL QRLPSVFVGR DDRLRLLVAA AADAARASLK KRGLHLPPWR KLEYMRAKWL SPYDREAPPP PEATTGELAG NGEGGGPSA

Best Arabidopsis Sequence Match ( AT2G38820.2 )
(BLAST)

001: MPLHMKIQPI DESDVSEEVP YPETMRQMPK SRLKRLFERQ FTNKNVSEKF TGSDVEAPLS RGNSGDFEPS SVCLAKMVLN FMEDNNGGEK QRCGRSRCNC
101: FSGSGTESSD DETECSSGEA CEILKSLVLC KSIRVRNLLT DVTKIAETSK NCKLKDGSCL KSVANGLVSL GYDAALCKSR WEKSPSCPAG EYEYVDVIMK
201: GERLLIDIDF KSKFEIARAT KTYKSMLQTL PYIFVGKADR LQKIIVLICK AAKQSLKKKG LHVPPWRRAE YVKSKWLSSH VRVDQNSNGE VKQESVEVIA
301: ESVSSIVFGV

Arabidopsis Description

Protein of unknown function (DUF506) [Source:TAIR;Acc:AT2G38820]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.