Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G22970.1 | CDX90583 | AT4G15560.1 | 24104567 |
| AT3G22970.1 | CDY09752 | AT4G15560.1 | 24104567 |
| AT3G22970.1 | CDY52177 | AT4G15560.1 | 24104567 |
| AT3G22970.1 | CDY64791 | AT4G15560.1 | 24104567 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033896.1-P | Field mustard | cytosol | 95.63 | 95.37 |
| CDY10329 | Canola | plastid | 94.26 | 91.27 |
| CDX92970 | Canola | cytosol | 74.04 | 81.38 |
| CDX94877 | Canola | cytosol | 75.14 | 79.25 |
| AT3G22970.1 | Thale cress | plastid | 76.5 | 75.68 |
| CDY29750 | Canola | nucleus, plastid | 65.3 | 67.51 |
| CDY16266 | Canola | nucleus | 65.57 | 67.23 |
| VIT_05s0020g04500.t01 | Wine grape | nucleus | 59.02 | 55.96 |
| KRH34359 | Soybean | plastid | 59.02 | 55.81 |
| KRG92439 | Soybean | plastid | 59.02 | 54.96 |
| KRH69065 | Soybean | cytosol | 51.64 | 51.64 |
| PGSC0003DMT400041951 | Potato | cytosol | 52.19 | 51.62 |
| CDX93300 | Canola | cytosol | 40.98 | 50.0 |
| KRH31637 | Soybean | cytosol | 52.19 | 49.87 |
| PGSC0003DMT400015576 | Potato | cytosol, plastid | 53.83 | 49.75 |
| CDY18366 | Canola | cytosol | 40.71 | 49.67 |
| Solyc09g082980.2.1 | Tomato | nucleus | 53.83 | 49.5 |
| GSMUA_Achr3P15230_001 | Banana | cytosol | 44.81 | 48.66 |
| Solyc06g053910.2.1 | Tomato | cytosol, plastid | 51.64 | 48.59 |
| CDY07696 | Canola | cytosol | 41.26 | 48.4 |
| CDY14428 | Canola | cytosol | 40.71 | 47.91 |
| GSMUA_Achr4P21100_001 | Banana | cytosol, plastid | 46.72 | 47.63 |
| GSMUA_Achr8P26930_001 | Banana | cytosol | 43.99 | 45.61 |
| GSMUA_Achr4P14880_001 | Banana | mitochondrion | 32.24 | 44.7 |
| GSMUA_Achr8P04470_001 | Banana | cytosol | 44.54 | 44.29 |
| GSMUA_Achr8P20590_001 | Banana | plastid | 43.44 | 43.8 |
| GSMUA_Achr9P10660_001 | Banana | cytosol, plastid | 44.81 | 42.93 |
| Zm00001d032955_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 32.79 | 40.0 |
| EER95459 | Sorghum | plastid | 32.51 | 39.8 |
| Os03t0162500-01 | Rice | plastid | 33.33 | 39.74 |
| EER91615 | Sorghum | mitochondrion | 31.69 | 39.59 |
| TraesCS4B01G278500.1 | Wheat | peroxisome, plastid | 33.33 | 39.23 |
| TraesCS4D01G277000.1 | Wheat | peroxisome, plastid | 33.06 | 38.91 |
| TraesCS4A01G025500.1 | Wheat | peroxisome, plastid | 33.33 | 38.73 |
| Os10t0417800-01 | Rice | plastid | 31.69 | 38.54 |
| HORVU4Hr1G073730.1 | Barley | peroxisome, plastid | 33.06 | 38.41 |
| Zm00001d027763_P001 | Maize | plastid | 31.42 | 38.33 |
| GSMUA_Achr9P25590_001 | Banana | plastid | 42.62 | 38.33 |
| TraesCS5B01G442200.1 | Wheat | plastid | 37.7 | 36.8 |
| TraesCS5A01G439200.1 | Wheat | plastid | 37.7 | 36.8 |
| TraesCS5D01G446400.1 | Wheat | plastid | 37.16 | 35.7 |
| EER93295 | Sorghum | plastid | 37.7 | 35.11 |
| Zm00001d018962_P001 | Maize | mitochondrion, plastid | 36.61 | 34.99 |
| Os03t0796600-01 | Rice | cytosol, nucleus, plastid | 37.7 | 34.07 |
| Zm00001d034444_P002 | Maize | plastid | 37.7 | 34.07 |
| HORVU5Hr1G105950.2 | Barley | plastid | 37.16 | 33.42 |
| Zm00001d007820_P002 | Maize | plastid | 35.25 | 32.17 |
| CDY60822 | Canola | nucleus | 23.22 | 28.43 |
| CDY34904 | Canola | nucleus | 23.22 | 28.15 |
| EER98072 | Sorghum | cytosol, plastid | 36.34 | 28.06 |
| CDY28060 | Canola | cytosol, nucleus, plastid | 22.68 | 27.67 |
| CDY35924 | Canola | nucleus | 22.4 | 27.33 |
| CDX88346 | Canola | nucleus | 18.85 | 26.85 |
| CDY15101 | Canola | nucleus | 20.22 | 26.62 |
| CDY52283 | Canola | nucleus | 20.49 | 26.6 |
| CDX87538 | Canola | nucleus | 18.31 | 26.07 |
| CDY07644 | Canola | cytosol | 21.31 | 25.91 |
| CDX87539 | Canola | nucleus | 18.85 | 25.75 |
| CDX88345 | Canola | nucleus | 18.58 | 25.37 |
| CDY24955 | Canola | cytosol | 20.77 | 25.17 |
| CDX88344 | Canola | cytosol | 18.03 | 24.91 |
| CDX87540 | Canola | cytosol | 17.76 | 24.71 |
| CDY53353 | Canola | mitochondrion | 19.13 | 23.89 |
| CDY30048 | Canola | mitochondrion | 18.85 | 23.39 |
| CDY21027 | Canola | cytosol | 18.31 | 22.71 |
| CDY31234 | Canola | cytosol | 17.76 | 22.11 |
| CDY13861 | Canola | nucleus | 17.76 | 21.96 |
| CDX81975 | Canola | nucleus | 17.49 | 21.62 |
| CDY05782 | Canola | nucleus | 16.94 | 20.88 |
| CDY31947 | Canola | nucleus | 16.94 | 20.88 |
| CDY29898 | Canola | nucleus | 15.85 | 19.66 |
| CDY18979 | Canola | nucleus | 15.85 | 19.4 |
| CDY49659 | Canola | nucleus | 15.85 | 19.4 |
| CDX92863 | Canola | nucleus | 15.3 | 18.98 |
Protein Annotations
| EnsemblPlants:CDY10330 | EnsemblPlantsGene:GSBRNA2T00032205001 | InterPro:PDDEXK-like | PANTHER:PTHR31579 | PANTHER:PTHR31579:SF19 | PFAM:PF04720 |
| ProteinID:CDY10330 | ProteinID:CDY10330.1 | SEG:seg | TIGRFAMs:TIGR01615 | UniParc:UPI0004EEF128 | UniProt:A0A078F733 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC05g29490DBnaC05g29490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F733]
Coordinates
chrLK032002:+:659290..660664
Molecular Weight (calculated)
40548.0 Da
IEP (calculated)
5.387
GRAVY (calculated)
-0.397
Length
366 amino acids
Sequence
(BLAST)
(BLAST)
001: MPFMMKIQPI DIDSPAVRET AARPVLKSRL KRLFDRPFTN VLRNATSEKP LHGGEVQCGG GAAVTEFEPS SVCLEKMVQN FIEETNEKQA KCGRNRCNCF
101: NGNNNDSSSD DDFDLFGGSA ESFIGNASDH LKSLVTCVSV AETDLLADAA KIVDKNRSVK RKEDLRKLLN EGLLSLHYDS SLCKSKWEKS PSFPTGEYEY
201: IDVIVGEERL LIDVDFRSEF DIARQTRGFK ALLQSLPFIF VGKSDRLTQI VSLISEAAKQ SLKKRGMHLP PWRKAEYMRS KWMSSYTRAS VVASRNAEEP
301: PATVAAAEPE LDCAELELVF EDKSLSPGVI NSSSSPFPSV NGGDDDVAVE REVKVTGLAS LFKERS
101: NGNNNDSSSD DDFDLFGGSA ESFIGNASDH LKSLVTCVSV AETDLLADAA KIVDKNRSVK RKEDLRKLLN EGLLSLHYDS SLCKSKWEKS PSFPTGEYEY
201: IDVIVGEERL LIDVDFRSEF DIARQTRGFK ALLQSLPFIF VGKSDRLTQI VSLISEAAKQ SLKKRGMHLP PWRKAEYMRS KWMSSYTRAS VVASRNAEEP
301: PATVAAAEPE LDCAELELVF EDKSLSPGVI NSSSSPFPSV NGGDDDVAVE REVKVTGLAS LFKERS
001: MPFTMKIQPI DIDSSPTVAR AESGNKPVLK SRLKRLFDRP FTNVLRNSTT TTTEKPFVVT GGEVQCGGVV TEFEPSSVCL AKMVQNFIEE NNEKQAKCGR
101: NRCNCFNGNN DGSSDDESDL FGGSIDGCDA SDHLKSLIPC TTVGERNLLA DAAKIVDKNK SVKRKDDMKK IVNEGLLSLN YNSSICKSKW DKSPSFPAGE
201: YEYIDVIIGE ERLIIDVDFR SEFDIARQTS GYKVLLQSLP FIFVGKSDRL SQIVFLISEA AKQSLKKKGM PFPPWRKAEY MRSKWLSSYT RASVVVVDET
301: VTVTDVTAAD AAVEKEVDSV EIELVFEEKC LSPRVIVNSS SSPTDGDDDV AVEREVKAVT GLASLFKEKP
101: NRCNCFNGNN DGSSDDESDL FGGSIDGCDA SDHLKSLIPC TTVGERNLLA DAAKIVDKNK SVKRKDDMKK IVNEGLLSLN YNSSICKSKW DKSPSFPAGE
201: YEYIDVIIGE ERLIIDVDFR SEFDIARQTS GYKVLLQSLP FIFVGKSDRL SQIVFLISEA AKQSLKKKGM PFPPWRKAEY MRSKWLSSYT RASVVVVDET
301: VTVTDVTAAD AAVEKEVDSV EIELVFEEKC LSPRVIVNSS SSPTDGDDDV AVEREVKAVT GLASLFKEKP
Arabidopsis Description
At3g22970 [Source:UniProtKB/TrEMBL;Acc:Q9LIJ8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.