Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G255800.1 | |
| TraesCS1B01G266500.1 | |
| TraesCS1D01G255100.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G22970.1 | TraesCS1A01G255800.1 | AT4G15560.1 | 24104567 |
| AT3G22970.1 | TraesCS1B01G266500.1 | AT4G15560.1 | 24104567 |
| AT3G22970.1 | TraesCS1D01G255100.1 | AT4G15560.1 | 24104567 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G442200.1 | Wheat | plastid | 97.07 | 97.07 |
| TraesCS5D01G446400.1 | Wheat | plastid | 96.8 | 95.28 |
| HORVU5Hr1G105950.2 | Barley | plastid | 92.53 | 85.26 |
| Os03t0796600-01 | Rice | cytosol, nucleus, plastid | 80.0 | 74.07 |
| EER93295 | Sorghum | plastid | 76.0 | 72.52 |
| Zm00001d034444_P002 | Maize | plastid | 74.67 | 69.14 |
| GSMUA_Achr4P21100_001 | Banana | cytosol, plastid | 49.6 | 51.81 |
| GSMUA_Achr8P20590_001 | Banana | plastid | 50.13 | 51.79 |
| GSMUA_Achr9P10660_001 | Banana | cytosol, plastid | 50.13 | 49.21 |
| GSMUA_Achr9P25590_001 | Banana | plastid | 49.33 | 45.45 |
| TraesCS4A01G025500.1 | Wheat | peroxisome, plastid | 37.87 | 45.08 |
| VIT_05s0020g04500.t01 | Wine grape | nucleus | 43.47 | 42.23 |
| PGSC0003DMT400041951 | Potato | cytosol | 41.33 | 41.89 |
| Bra036877.1-P | Field mustard | cytosol, plastid | 39.2 | 41.53 |
| CDY29750 | Canola | nucleus, plastid | 38.93 | 41.24 |
| CDY16266 | Canola | nucleus | 39.2 | 41.18 |
| KRH34359 | Soybean | plastid | 42.4 | 41.09 |
| AT2G38820.2 | Thale cress | cytosol | 33.6 | 40.65 |
| KRG92439 | Soybean | plastid | 42.4 | 40.46 |
| AT3G54550.1 | Thale cress | plastid | 30.93 | 40.28 |
| AT4G14620.1 | Thale cress | cytosol | 36.53 | 40.18 |
| CDX92970 | Canola | cytosol | 35.47 | 39.94 |
| Bra001897.1-P | Field mustard | cytosol | 35.47 | 39.94 |
| PGSC0003DMT400015576 | Potato | cytosol, plastid | 42.13 | 39.9 |
| KRH69065 | Soybean | cytosol | 38.93 | 39.89 |
| CDY18366 | Canola | cytosol | 31.47 | 39.33 |
| Solyc09g082980.2.1 | Tomato | nucleus | 41.6 | 39.2 |
| VIT_00s0179g00360.t01 | Wine grape | cytosol | 41.33 | 39.04 |
| Bra017099.1-P | Field mustard | cytosol | 31.2 | 39.0 |
| KRH32089 | Soybean | cytosol | 35.2 | 38.94 |
| KRH31637 | Soybean | cytosol | 39.73 | 38.9 |
| KRH71351 | Soybean | cytosol | 37.07 | 38.72 |
| Solyc06g053910.2.1 | Tomato | cytosol, plastid | 39.73 | 38.3 |
| KRG95606 | Soybean | cytosol | 36.8 | 38.23 |
| Bra000098.1-P | Field mustard | cytosol | 31.47 | 38.19 |
| CDY07696 | Canola | cytosol | 31.73 | 38.14 |
| CDX93300 | Canola | cytosol | 30.4 | 38.0 |
| Bra033896.1-P | Field mustard | cytosol | 37.07 | 37.87 |
| CDX94877 | Canola | cytosol | 34.93 | 37.75 |
| CDY10330 | Canola | cytosol | 36.8 | 37.7 |
| CDY14428 | Canola | cytosol | 31.2 | 37.62 |
| AT3G22970.1 | Thale cress | plastid | 37.07 | 37.57 |
| CDY10329 | Canola | plastid | 35.2 | 34.92 |
| PGSC0003DMT400049773 | Potato | nucleus | 37.07 | 32.03 |
| Solyc09g065760.2.1 | Tomato | cytosol, plastid | 37.07 | 31.95 |
| TraesCS3A01G420900.1 | Wheat | cytosol | 23.73 | 30.69 |
| TraesCS1A01G339700.1 | Wheat | cytosol | 23.47 | 30.24 |
| TraesCS3A01G274100.1 | Wheat | nucleus | 22.4 | 30.11 |
| TraesCS3A01G409700.1 | Wheat | cytosol | 18.93 | 29.34 |
| TraesCS6A01G283100.1 | Wheat | cytosol | 22.67 | 27.33 |
| TraesCS4A01G116900.1 | Wheat | plastid | 22.93 | 26.38 |
| TraesCS3A01G530700.1 | Wheat | plastid | 20.53 | 22.32 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G439200.1 | EnsemblPlantsGene:TraesCS5A01G439200 | InterPro:PDDEXK-like | PANTHER:PTHR31579 | PANTHER:PTHR31579:SF19 | PFAM:PF04720 |
| SEG:seg | TIGRFAMs:TIGR01615 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr5A:+:620857323..620858645
Molecular Weight (calculated)
40070.7 Da
IEP (calculated)
9.562
GRAVY (calculated)
-0.376
Length
375 amino acids
Sequence
(BLAST)
(BLAST)
001: MPFQLKAGHH HGAMDGKPPP PPPLAPPRVS RLRRLLVRVS ASERLAVAGD GKEREKEERP VGSGEAEVGS VGLDRMVLSF MEDSAAVERP PRGRCNCFNG
101: SNYEESDDEE GFFLPSGQAS APPPSAAGDT LEALKSLVQS ASVAERNLLA DASRIAERCG RTCKGKAECR RAVADGLRAL GYDAAVCKSR WEKTKSYPAG
201: EHEYIDAVVG DGARLIVEVH FRSEFEVARS TKAYRAALQA LPPLFVGTSD RLGKIVSVVA EAARQSMKKK GLHFPPWRKP EYMRAKWLSP HVRTGDKAAA
301: PSPAASATAT ATAVSAASFS GEFELLFGMN QSGGVSSTPG EKITVVVSPW RPTEEAASKK QQPRAKVVTG LAAVL
101: SNYEESDDEE GFFLPSGQAS APPPSAAGDT LEALKSLVQS ASVAERNLLA DASRIAERCG RTCKGKAECR RAVADGLRAL GYDAAVCKSR WEKTKSYPAG
201: EHEYIDAVVG DGARLIVEVH FRSEFEVARS TKAYRAALQA LPPLFVGTSD RLGKIVSVVA EAARQSMKKK GLHFPPWRKP EYMRAKWLSP HVRTGDKAAA
301: PSPAASATAT ATAVSAASFS GEFELLFGMN QSGGVSSTPG EKITVVVSPW RPTEEAASKK QQPRAKVVTG LAAVL
001: MPLHMKIQPI DESDVSEEVP YPETMRQMPK SRLKRLFERQ FTNKNVSEKF TGSDVEAPLS RGNSGDFEPS SVCLAKMVLN FMEDNNGGEK QRCGRSRCNC
101: FSGSGTESSD DETECSSGEA CEILKSLVLC KSIRVRNLLT DVTKIAETSK NCKLKDGSCL KSVANGLVSL GYDAALCKSR WEKSPSCPAG EYEYVDVIMK
201: GERLLIDIDF KSKFEIARAT KTYKSMLQTL PYIFVGKADR LQKIIVLICK AAKQSLKKKG LHVPPWRRAE YVKSKWLSSH VRVDQNSNGE VKQESVEVIA
301: ESVSSIVFGV
101: FSGSGTESSD DETECSSGEA CEILKSLVLC KSIRVRNLLT DVTKIAETSK NCKLKDGSCL KSVANGLVSL GYDAALCKSR WEKSPSCPAG EYEYVDVIMK
201: GERLLIDIDF KSKFEIARAT KTYKSMLQTL PYIFVGKADR LQKIIVLICK AAKQSLKKKG LHVPPWRRAE YVKSKWLSSH VRVDQNSNGE VKQESVEVIA
301: ESVSSIVFGV
Arabidopsis Description
Protein of unknown function (DUF506) [Source:TAIR;Acc:AT2G38820]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.