Factsheet for TraesCS4A01G116900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G392100.1
TraesCS1B01G420200.1
TraesCS1D01G400200.2
TraesCS3A01G270400.1
TraesCS3A01G305500.1
TraesCS3B01G304200.1
TraesCS3B01G331000.1
TraesCS3D01G270200.1
TraesCS3D01G296400.1
TraesCS6A01G251400.1
TraesCS6B01G273900.1
TraesCS6D01G233200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07350.1	TraesCS1A01G392100.1	AT1G52240.1	21798944
AT3G07350.1	TraesCS1B01G420200.1	AT1G52240.1	21798944
AT3G07350.1	TraesCS1D01G400200.2	AT1G52240.1	21798944
AT3G07350.1	TraesCS3A01G270400.1	AT1G52240.1	21798944
AT3G07350.1	TraesCS3A01G305500.1	AT1G52240.1	21798944
AT3G07350.1	TraesCS3B01G304200.1	AT1G52240.1	21798944
AT3G07350.1	TraesCS3B01G331000.1	AT1G52240.1	21798944
AT3G07350.1	TraesCS3D01G270200.1	AT1G52240.1	21798944
AT3G07350.1	TraesCS3D01G296400.1	AT1G52240.1	21798944
AT3G07350.1	TraesCS6A01G251400.1	AT3G48150.1	21798944
AT3G07350.1	TraesCS6B01G273900.1	AT3G48150.1	21798944
AT3G07350.1	TraesCS6D01G233200.1	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G188800.1	Wheat	mitochondrion	87.73	95.65
TraesCS4B01G187500.1	Wheat	mitochondrion	87.42	95.32
HORVU4Hr1G054810.1	Barley	mitochondrion	83.44	92.83
Os11t0437600-01	Rice	plastid	57.98	61.76
GSMUA_Achr6P21070_001	Banana	cytosol	42.33	46.31
TraesCS3A01G420900.1	Wheat	cytosol	36.81	41.38
Bra040373.1-P	Field mustard	plastid	23.31	39.58
CDY60822	Canola	nucleus	31.6	34.45
CDY34904	Canola	nucleus	31.29	33.77
Bra029641.1-P	Field mustard	nucleus	30.98	33.67
CDY35924	Canola	nucleus	30.98	33.67
VIT_00s0337g00040.t01	Wine grape	cytosol	28.53	32.98
AT3G07350.1	Thale cress	nucleus	30.06	32.89
CDY28060	Canola	cytosol, nucleus, plastid	30.06	32.67
Solyc06g007580.1.1	Tomato	nucleus	29.45	32.11
PGSC0003DMT400053173	Potato	nucleus	28.83	31.44
KRH46613	Soybean	mitochondrion, nucleus	26.99	30.88
KRH07392	Soybean	nucleus	28.22	30.77
AT3G25240.1	Thale cress	cytosol	26.38	30.61
Solyc06g083160.1.1	Tomato	nucleus	27.3	30.38
PGSC0003DMT400051812	Potato	nucleus	26.99	29.63
CDY52283	Canola	nucleus	25.46	29.43
Bra013223.1-P	Field mustard	nucleus	25.46	29.43
CDY15101	Canola	nucleus	24.54	28.78
TraesCS6A01G283100.1	Wheat	cytosol	25.46	26.69
PGSC0003DMT400008686	Potato	cytosol	22.39	26.64
TraesCS4A01G025500.1	Wheat	peroxisome, plastid	25.46	26.35
Solyc09g057760.2.1	Tomato	nucleus	16.56	25.0
TraesCS3A01G409700.1	Wheat	cytosol	18.4	24.79
TraesCS1A01G339700.1	Wheat	cytosol	20.86	23.37
TraesCS5A01G439200.1	Wheat	plastid	26.38	22.93
TraesCS3A01G274100.1	Wheat	nucleus	18.1	21.15
TraesCS3A01G530700.1	Wheat	plastid	19.94	18.84

Protein Annotations

EnsemblPlants:TraesCS4A01G116900.1	EnsemblPlantsGene:TraesCS4A01G116900	InterPro:PDDEXK-like	PANTHER:PTHR31579	PANTHER:PTHR31579:SF9	PFAM:PF04720
SEG:seg	TIGRFAMs:TIGR01615	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr4A:-:141571185..141572165

Molecular Weight (calculated)

35065.5 Da

IEP (calculated)

7.667

GRAVY (calculated)

-0.285

Length

326 amino acids

Sequence
(BLAST)

001: MHSVTLLTTK SQIITTDMHP PTSHQLQMPT APTPRLRPKR ATAPLDAAAR ARLAALPRSD DSSGSEHEAA ALSSLINDYL LETDATVPSA TLAVEGSSDL
101: DDEPNGDTSS TAAADMLAEI KDNLDPTGSS ADELRRRLVF AVADAMRGLD DLRPNQSAFR RAVMSRLRER GHDAGLCKVR WDKSSGVTAG SYEYIDIVAG
201: GDETRYIVDV GFATEFEVAR STEEYEAVRT ALPEVLIARP EHLRQVVKLA ASAARRSLKS SGLSVPPWRK RRFMMTKWLG PYKRTVNSIP APAGTALGSS
301: GVVAVCRTIV GFAPQTTVGT SSGFWG

Best Arabidopsis Sequence Match ( AT3G07350.1 )
(BLAST)

001: MGFSRAKRVT DPLAEEVRAR LVGCSFSSGS EHTGDGIEDY EDDDSPCLSD LVQGFLEDEV DTVDDESCWC DQDSGSDSDS DSELGELPDF ADDIAKLLRN
101: SLREDSYGRT VLVHVARAME MLSSLGSQPE QRAVFQRKVM SLLRELGHNA AICKTKWKSS GGLTAGNHEF IDVVYTPSAS SQSVRFIVDL DFSSRFQIAR
201: PTSQYARVLQ SLPAVFVGKG DDLKRILRLV CDAARISLRN RGLTLPPWRK NRYMQTRWLG PYKRTTNLTP STSGVDTVMC RAIGFDNAVG GRLFVRTR

Arabidopsis Description

F21O3.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9SRT1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.