Factsheet for Bra040373.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
peroxisome 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra018081.1-P
Bra018956.1-P
Bra030396.1-P
Bra033769.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07350.1	Bra018956.1-P	AT1G52240.1	21798944
AT3G07350.1	Bra030396.1-P	AT1G52240.1	21798944
AT3G07350.1	Bra018081.1-P	AT3G48150.1	21798944
AT3G07350.1	Bra033769.1-P	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60822	Canola	nucleus	100.0	64.21
CDY34904	Canola	nucleus	96.88	61.59
Bra029641.1-P	Field mustard	nucleus	83.85	53.67
AT3G07350.1	Thale cress	nucleus	81.77	52.68
VIT_00s0337g00040.t01	Wine grape	cytosol	53.65	36.52
Solyc06g007580.1.1	Tomato	nucleus	54.69	35.12
Bra013223.1-P	Field mustard	nucleus	51.56	35.11
PGSC0003DMT400053173	Potato	nucleus	53.65	34.45
PGSC0003DMT400051812	Potato	nucleus	52.08	33.67
Solyc06g083160.1.1	Tomato	nucleus	51.04	33.45
PGSC0003DMT400008686	Potato	cytosol	43.75	30.66
KRH07392	Soybean	nucleus	45.83	29.43
KRH46613	Soybean	mitochondrion, nucleus	42.19	28.42
Solyc09g057760.2.1	Tomato	nucleus	31.25	27.78
GSMUA_Achr6P21070_001	Banana	cytosol	40.1	25.84
TraesCS4D01G188800.1	Wheat	mitochondrion	39.58	25.42
HORVU4Hr1G054810.1	Barley	mitochondrion	38.54	25.26
Os01t0915000-01	Rice	cytosol	36.98	24.23
TraesCS4B01G187500.1	Wheat	mitochondrion	37.5	24.08
EES04096	Sorghum	cytosol	36.98	23.99
Os11t0437600-01	Rice	plastid	38.02	23.86
Zm00001d042376_P001	Maize	cytosol	36.46	23.81
Zm00001d012069_P001	Maize	mitochondrion	35.42	23.61
TraesCS3B01G456400.1	Wheat	cytosol	35.42	23.61
TraesCS3A01G420900.1	Wheat	cytosol	35.42	23.45
TraesCS4A01G116900.1	Wheat	plastid	39.58	23.31
TraesCS3D01G416400.1	Wheat	cytosol	35.42	23.29
Bra015691.1-P	Field mustard	cytosol	31.25	22.81
Bra015689.1-P	Field mustard	nucleus	30.21	22.57
Bra016797.1-P	Field mustard	cytosol	33.85	22.03
Bra015690.1-P	Field mustard	nucleus	30.21	21.64
Bra019736.1-P	Field mustard	mitochondrion	32.29	21.16
Bra000140.1-P	Field mustard	cytosol	32.81	20.86
Bra017099.1-P	Field mustard	cytosol	31.25	20.0
Bra036877.1-P	Field mustard	cytosol, plastid	34.9	18.93
Bra000098.1-P	Field mustard	cytosol	29.69	18.45
Bra001897.1-P	Field mustard	cytosol	31.77	18.32
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	19.79	18.27
Bra033896.1-P	Field mustard	cytosol	34.9	18.26
HORVU3Hr1G093260.1	Barley	plastid	36.98	17.53
Bra024209.1-P	Field mustard	nucleus	25.0	16.27
Bra026262.1-P	Field mustard	nucleus	24.48	15.72
Bra031136.1-P	Field mustard	nucleus	22.92	14.97
Bra036492.1-P	Field mustard	nucleus	22.92	14.81

Protein Annotations

EnsemblPlants:Bra040373.1	EnsemblPlants:Bra040373.1-P	EnsemblPlantsGene:Bra040373	InterPro:PDDEXK-like	PANTHER:PTHR31579	PANTHER:PTHR31579:SF4
PFAM:PF04720	TIGRFAMs:TIGR01615	UniParc:UPI0002544927	UniProt:M4FGZ5	MapMan:35.2	:

Description

AT3G07350 (E=4e-084) | unknown protein

Coordinates

chrA01:-:27947913..27948491

Molecular Weight (calculated)

21601.5 Da

IEP (calculated)

11.361

GRAVY (calculated)

-0.143

Length

192 amino acids

Sequence
(BLAST)

001: MVLFHVAKAM EMLSSSRSDQ EQRAVLRRKL MSLLRELGHN AAICKTKWKS SGGGLTAGNH EFIDVVYTPV ATSSQTVRYI VDIDFKSHFQ VARPTVQYAR
101: VLQSLPTIFV GRGEDLKRIL RLVCDAARIS LKSCGLTLPP WRKNRYMQTR WLGSYKRTVN LTPSSRAVNT VVCRAIGFDN AVGGGRLFVR TR

Best Arabidopsis Sequence Match ( AT3G07350.1 )
(BLAST)

001: MGFSRAKRVT DPLAEEVRAR LVGCSFSSGS EHTGDGIEDY EDDDSPCLSD LVQGFLEDEV DTVDDESCWC DQDSGSDSDS DSELGELPDF ADDIAKLLRN
101: SLREDSYGRT VLVHVARAME MLSSLGSQPE QRAVFQRKVM SLLRELGHNA AICKTKWKSS GGLTAGNHEF IDVVYTPSAS SQSVRFIVDL DFSSRFQIAR
201: PTSQYARVLQ SLPAVFVGKG DDLKRILRLV CDAARISLRN RGLTLPPWRK NRYMQTRWLG PYKRTTNLTP STSGVDTVMC RAIGFDNAVG GRLFVRTR

Arabidopsis Description

F21O3.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9SRT1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.